Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.4e-186 654.8 324 100.0
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 9.9e-170 600.1 368 83.2
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 6.9e-147 524.2 369 72.6
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.5e-120 434.9 383 60.3
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 3.3e-117 425.6 381 60.6
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.8e-116 422.5 371 58.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.8e-116 421.8 370 58.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.9e-114 414.8 371 58.2
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.7e-113 413.3 371 59.6
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.0e-113 411.8 372 58.1
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.5e-112 409.5 371 58.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.2e-111 407.1 371 57.4
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.2e-111 407.1 371 58.8
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.1e-111 406.4 370 57.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.4e-110 403.7 371 57.7
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.0e-110 402.1 373 56.6
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.8e-110 401.0 370 56.8
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 2.6e-109 399.4 370 57.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 5.7e-109 398.3 376 55.9
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 9.7e-109 397.5 371 56.3
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.3e-108 397.1 368 57.3
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.7e-108 396.7 371 56.9
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 3.7e-108 395.6 370 56.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 8.3e-108 394.4 368 57.6
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 8.3e-108 394.4 345 60.0
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-107 392.9 371 56.3
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.3e-107 391.7 371 56.1
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.3e-107 391.7 371 55.5
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.0e-107 391.3 372 56.5
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 7.0e-107 391.3 370 54.9
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.6e-106 390.2 372 56.2
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.5e-106 388.7 372 56.5
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.0e-105 387.5 373 54.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 5.0e-105 385.2 379 55.4
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.2e-104 382.5 370 53.5
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 4.2e-104 382.1 369 56.1
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 9.4e-104 380.9 371 55.8
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.6e-103 380.2 373 53.1
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.1e-103 379.8 370 53.2
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.4e-102 377.1 371 54.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 4.0e-102 375.6 368 55.2
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 8.8e-102 374.4 368 55.4
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 8.8e-102 374.4 369 54.7
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.2e-101 374.0 376 55.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.5e-101 373.6 372 55.6
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 7.5e-101 371.3 368 55.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.5e-101 371.3 368 54.3
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 7.5e-101 371.3 368 54.3
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 9.8e-101 370.9 372 52.4
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.3e-100 370.5 368 54.6
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.7e-100 370.2 362 53.3
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 2.2e-100 369.8 371 53.4
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.8e-100 369.4 370 52.2
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.8e-100 369.4 371 53.1
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 6.3e-100 368.2 368 54.1
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.1e-99 367.5 371 52.6
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.4e-99 367.1 374 53.7
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 7.0e-99 364.8 371 52.6
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.6e-98 363.6 369 52.8
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 3.8e-97 359.0 366 54.1
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 3.8e-97 359.0 283 65.4
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 7.2e-96 354.8 414 49.8
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.8e-95 352.8 365 54.0
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.1e-95 351.7 376 51.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.3e-94 349.7 370 52.2
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.3e-94 349.7 284 62.7
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.3e-94 349.7 378 50.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 3.0e-94 349.4 376 51.3
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 4.0e-94 349.0 387 49.6
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 5.2e-94 348.6 355 53.0
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 6.8e-94 348.2 354 54.5
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.2e-93 347.4 379 51.5
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.5e-93 347.1 371 50.7
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 2.0e-93 346.7 373 50.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-93 346.7 381 51.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-93 346.7 379 51.2
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.0e-93 346.7 380 51.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.4e-93 345.9 371 52.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 7.5e-93 344.7 377 50.9
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 7.5e-93 344.7 379 50.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 7.5e-93 344.7 380 50.8
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.3e-92 344.0 372 50.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.3e-92 344.0 376 50.5
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.3e-92 344.0 380 50.8
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-92 344.0 374 51.1
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.3e-92 344.0 352 53.1
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 3.7e-92 342.4 349 52.7
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 8.3e-92 341.3 377 50.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 3.2e-91 339.3 402 48.0
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.0e-91 338.2 281 59.4
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 5.9e-90 335.1 379 49.9
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 7.8e-90 334.7 284 60.2
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.3e-89 334.0 369 50.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.7e-89 333.6 295 56.9
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.3e-89 333.2 345 53.3
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 2.9e-89 332.8 372 48.1
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.9e-88 330.1 345 52.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.2e-87 327.4 378 50.8
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.1e-87 326.6 372 48.1
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.8e-87 326.2 285 57.9
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.5e-85 320.5 351 51.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 4.4e-85 318.9 326 53.7
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.3e-84 317.4 371 48.5
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.3e-84 317.4 354 50.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.7e-84 317.0 349 51.3
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.9e-84 315.5 371 49.3
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.0e-81 307.8 372 44.1
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.3e-81 306.6 372 43.8
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 2.3e-81 306.6 384 46.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 6.6e-81 305.1 336 51.2
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 8.6e-81 304.7 371 43.4
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.1e-80 304.3 284 55.3
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 7.3e-80 301.6 332 50.3
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.3e-78 296.6 371 43.7
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.5e-77 293.9 368 47.3
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.0e-77 293.5 375 45.1
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.5e-77 291.6 395 42.0
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 3.3e-72 276.2 370 44.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 8.1e-71 271.6 347 42.4
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 4.4e-69 265.8 297 48.5
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.7e-68 262.7 343 44.0
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.1e-67 259.2 242 55.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 5.1e-65 252.3 236 57.6
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.4e-62 244.2 384 38.3
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.6e-61 238.4 254 52.8
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.3e-57 226.9 242 50.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.9e-56 223.8 475 33.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 4.3e-56 222.6 407 34.6
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.1e-54 216.5 385 35.8
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.0e-54 216.1 229 53.3
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.6e-53 213.4 202 54.0
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.4e-51 207.6 243 49.4
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 2.4e-51 206.8 292 44.9
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 9.3e-51 204.9 216 50.9
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.3e-47 194.5 211 52.1
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.2e-45 188.0 231 47.6
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.3e-44 184.5 385 33.0
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.6e-42 177.6 223 45.3
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.6e-42 176.0 152 57.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.5e-37 161.0 334 32.9
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.0e-36 158.3 248 40.3
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 7.9e-34 148.7 384 28.9
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.6e-26 124.4 136 48.5
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.8e-23 112.8 76 71.1
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 8.2e-23 112.1 73 71.2
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.9e-21 105.9 115 50.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.5e-19 100.5 117 48.7
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.2e-18 98.2 162 34.0
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.3e-17 94.0 83 55.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.4e-14 84.0 338 25.1
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 9.1e-14 82.0 42 92.9
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 5.7e-08 62.8 77 45.5
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.4e-06 58.2 50 60.0


User provided reference genes

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