Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1505.3 743 100.0
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1328.9 744 90.6
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1236.5 744 83.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1202.6 744 82.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1199.5 744 80.0
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1168.3 744 78.2
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 741 76.5
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 741 76.8
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 741 76.7
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1140.6 741 76.1
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 741 76.2
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 741 75.2
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 740 75.4
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 741 75.0
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 740 75.3
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 745 75.6
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 740 75.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 741 74.6
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 742 75.5
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1124.0 741 74.1
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1122.8 742 75.2
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 741 74.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 742 74.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 741 74.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1117.4 741 74.5
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 744 74.1
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1111.3 741 74.4
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 741 74.0
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1109.4 741 73.8
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1109.0 740 74.6
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1108.6 741 73.8
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1107.8 741 73.7
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1107.4 741 73.7
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1106.3 742 73.6
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 740 74.6
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1103.6 741 74.4
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1102.0 740 73.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1101.7 740 73.6
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1099.7 741 73.1
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 740 74.5
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 752 72.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1096.6 740 73.6
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1095.9 752 73.1
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1095.5 740 74.1
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1095.5 740 74.2
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1092.8 741 73.7
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1092.0 742 73.3
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1091.3 740 74.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1090.1 744 73.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1089.3 739 73.6
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 740 73.9
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 740 73.9
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1088.6 742 73.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1088.2 742 73.3
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1086.6 740 73.9
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1086.2 742 73.6
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 740 73.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1083.9 740 73.5
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1083.2 742 72.0
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 740 73.4
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1082.4 742 72.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1082.0 740 72.8
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1080.1 747 71.9
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1080.1 740 73.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1079.7 740 73.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1077.0 719 74.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1076.6 740 70.8
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1075.8 741 73.5
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 1.0e-311 1072.8 741 72.2
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 1.5e-311 1072.4 740 70.3
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 2.0e-311 1072.0 741 70.2
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 3.6e-311 1071.2 740 72.8
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 3.6e-311 1071.2 739 72.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.0e-310 1069.7 740 72.6
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 1.9e-309 1065.4 740 70.4
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 1.6e-308 1062.4 742 70.5
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 1.6e-308 1062.4 742 70.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 2.3e-307 1058.5 740 69.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.2e-307 1057.4 740 70.3
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 8.9e-307 1056.6 740 70.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 1.7e-305 1052.4 740 72.6
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 4.9e-305 1050.8 741 72.2
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 2.4e-304 1048.5 735 69.1
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 2.0e-303 1045.4 765 70.5
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.0e-302 1043.1 740 71.4
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 8.6e-302 1040.0 740 70.3
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 5.6e-301 1037.3 740 70.8
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 2.1e-300 1035.4 741 70.6
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 3.6e-300 1034.6 695 72.9
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 1.4e-299 1032.7 741 69.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 1.5e-298 1029.2 761 66.6
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 6.0e-295 1017.3 739 69.3
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 9.5e-293 1010.0 728 70.1
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.0e-290 1002.3 728 69.6
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 9.8e-290 1000.0 742 67.9
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 1.1e-288 996.5 658 75.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.9e-288 995.7 742 68.6
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 7.1e-288 993.8 720 69.2
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 9.9e-282 973.4 747 67.1
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.8e-275 952.6 748 65.5
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 9.3e-272 940.3 737 63.6
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.1e-267 926.8 628 72.3
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 3.3e-253 878.6 685 65.3
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 6.9e-243 844.3 743 61.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 9.3e-240 833.9 589 71.8
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.1e-232 810.4 627 64.6
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.1e-231 806.2 750 55.6
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 9.1e-219 764.2 582 66.8
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.9e-209 732.6 751 52.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.9e-209 732.6 751 52.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.1e-208 730.7 743 51.8
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.6e-207 726.9 755 51.9
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-203 713.4 751 51.1
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 3.0e-198 696.0 761 50.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.5e-192 676.4 507 68.4
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 6.2e-167 592.0 418 71.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 6.9e-150 535.4 392 67.9
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.3e-143 514.6 773 40.5
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 2.6e-117 427.2 554 45.8
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.1e-99 368.6 323 58.5
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.2e-95 354.4 254 66.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.0e-92 345.5 246 70.3
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.9e-91 341.3 814 32.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.6e-90 338.2 860 30.7
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 5.0e-76 290.0 258 58.9
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 9.5e-75 285.8 176 77.8
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.0e-72 278.1 166 78.3
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-68 265.4 184 69.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 4.7e-58 230.3 281 48.4
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.3e-52 212.2 251 45.4
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.9e-52 210.7 127 75.6
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.1e-51 209.1 687 28.7
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 3.8e-47 194.1 138 73.2
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 3.6e-42 177.6 145 66.2
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 7.6e-32 143.3 75 90.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.4e-30 139.0 76 85.5
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.2e-24 119.4 99 60.6
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.6e-24 118.2 99 56.6
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 2.7e-21 108.2 85 58.8
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.8e-20 105.5 130 48.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 5.5e-14 84.0 50 78.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 4.6e-13 80.9 50 72.0
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.3e-12 79.3 88 47.7


User provided reference genes

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