Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004054 Chenopodium quinoa HOM05D004251 ORTHO05D005010 1.1e-124 449.9 214 100.0
AUR62007569 Chenopodium quinoa HOM05D004251 ORTHO05D005010 1.3e-104 383.3 214 87.4
Ah.03g140880 Amaranthus hybridus HOM05D004251 ORTHO05D005010 1.0e-98 363.6 213 81.2
Ciclev10025293m.g Citrus clementina HOM05D004251 ORTHO05D005010 1.1e-95 353.6 213 78.4
QL06p046182 Quercus lobata HOM05D004251 ORTHO05D005010 2.6e-94 349.0 213 78.4
Actinidia36561 Actinidia chinensis HOM05D004251 ORTHO05D005010 1.7e-93 346.3 213 77.5
Hund13977 Selenicereus undatus HOM05D004251 ORTHO05D005010 2.2e-93 345.9 213 77.5
COL.COLO4_22078 Corchorus olitorius HOM05D004251 ORTHO05D005010 2.9e-93 345.5 208 78.8
MD02G1147300 Malus domestica HOM05D004251 ORTHO05D005010 2.9e-93 345.5 213 77.0
Hma1.2p1_0224F.1_g094630 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 3.8e-93 345.1 213 77.0
QL06p046103 Quercus lobata HOM05D004251 ORTHO05D005010 3.8e-93 345.1 213 77.0
PGR102G3108 Punica granatum HOM05D004251 ORTHO05D005010 5.0e-93 344.7 213 76.1
Potri.007G025300 Populus trichocarpa HOM05D004251 ORTHO05D005010 1.4e-92 343.2 213 76.1
Prupe.7G154800 Prunus persica HOM05D004251 ORTHO05D005010 1.4e-92 343.2 213 76.5
GSVIVG01018958001 Vitis vinifera HOM05D004251 ORTHO05D005010 1.4e-92 343.2 213 77.0
Manes.02G094600 Manihot esculenta HOM05D004251 ORTHO05D005010 1.9e-92 342.8 212 75.9
CSS0006960 Camellia sinensis var. sinensis HOM05D004251 ORTHO05D005010 7.2e-92 340.9 213 76.1
RcHm_v2.0_Chr2g0101541 Rosa chinensis HOM05D004251 ORTHO05D005010 7.2e-92 340.9 213 76.1
Lj2C453G4 Lonicera japonica HOM05D004251 ORTHO05D005010 2.1e-91 339.3 212 75.5
LjContig00448g0018994 Lotus japonicus HOM05D004251 ORTHO05D005010 2.1e-91 339.3 213 74.6
Cpa.g.sc39.20 Carica papaya HOM05D004251 ORTHO05D005010 2.7e-91 339.0 213 77.0
Eucgr.D02612 Eucalyptus grandis HOM05D004251 ORTHO05D005010 7.9e-91 337.4 213 75.6
Thecc.01G035600 Theobroma cacao HOM05D004251 ORTHO05D005010 7.9e-91 337.4 208 77.9
Duzib147G0019 Durio zibethinus HOM05D004251 ORTHO05D005010 1.0e-90 337.0 208 77.4
Glyma.16G139600 Glycine max HOM05D004251 ORTHO05D005010 1.0e-90 337.0 210 75.2
Ca_22268_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-90 336.7 212 74.5
Ca_22281_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-90 336.7 212 74.5
Lj1g0003213 Lotus japonicus HOM05D004251 ORTHO05D005010 1.3e-90 336.7 213 73.7
arahy.Tifrunner.gnm1.ann1.UMLA17 Arachis hypogaea HOM05D004251 ORTHO05D005010 1.8e-90 336.3 213 74.6
DCAR_017290 Daucus carota HOM05D004251 ORTHO05D005010 1.8e-90 336.3 207 76.3
VMungo0251G3189 Vigna mungo HOM05D004251 ORTHO05D005010 1.8e-90 336.3 213 74.2
FAN28G2031 Fragaria x ananassa HOM05D004251 ORTHO05D005010 3.0e-90 335.5 213 75.6
CiPaw.01G038300 Carya illinoinensis HOM05D004251 ORTHO05D005010 3.9e-90 335.1 212 75.0
Lalb_Chr05g0227621 Lupinus albus HOM05D004251 ORTHO05D005010 3.9e-90 335.1 213 74.6
Medtr8g077580 Medicago truncatula HOM05D004251 ORTHO05D005010 3.9e-90 335.1 212 74.1
Phvul.003G253700 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 3.9e-90 335.1 213 74.2
Sc03g0002980 Simmondsia chinensis HOM05D004251 ORTHO05D005010 3.9e-90 335.1 213 73.7
FAN19G0724 Fragaria x ananassa HOM05D004251 ORTHO05D005010 5.1e-90 334.7 213 75.1
TPR.G24109 Trifolium pratense HOM05D004251 ORTHO05D005010 6.7e-90 334.3 213 73.2
Aa31LG1G15090 Aethionema arabicum HOM05D004251 ORTHO05D005010 8.7e-90 334.0 212 74.1
Aqoxy5G01628 Aquilegia oxysepala HOM05D004251 ORTHO05D005010 8.7e-90 334.0 209 75.6
Solyc02g085250.4 Solanum lycopersicum HOM05D004251 ORTHO05D005010 8.7e-90 334.0 213 73.2
Glyma.02G056800 Glycine max HOM05D004251 ORTHO05D005010 1.1e-89 333.6 210 74.3
EL10Ac6g15559 Beta vulgaris HOM05D004251 ORTHO05D005010 1.5e-89 333.2 251 67.3
THA.LOC104821294 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.5e-89 333.2 211 73.9
THA.LOC104821560 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.5e-89 333.2 211 73.9
Gohir.A02G165500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 3.3e-89 332.0 207 77.3
MD15G1261600 Malus domestica HOM05D004251 ORTHO05D005010 3.3e-89 332.0 213 74.6
Sopen02g029950 Solanum pennellii HOM05D004251 ORTHO05D005010 3.3e-89 332.0 213 72.8
Cc11_g04410 Coffea canephora HOM05D004251 ORTHO05D005010 4.3e-89 331.6 212 73.6
ECA232G3289 Erigeron canadensis HOM05D004251 ORTHO05D005010 4.3e-89 331.6 212 73.1
FvH4_1g13300 Fragaria vesca HOM05D004251 ORTHO05D005010 4.3e-89 331.6 213 74.6
Gohir.D03G014500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 4.3e-89 331.6 207 76.8
Psat4g093040 Pisum sativum HOM05D004251 ORTHO05D005010 5.7e-89 331.3 212 73.1
Gorai.003G014800 Gossypium raimondii HOM05D004251 ORTHO05D005010 7.4e-89 330.9 207 76.8
Thhalv10024792m.g Eutrema salsugineum HOM05D004251 ORTHO05D005010 9.7e-89 330.5 212 73.1
HanXRQChr09g0274621 Helianthus annuus HOM05D004251 ORTHO05D005010 9.7e-89 330.5 208 74.0
AL8G23350 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 1.3e-88 330.1 212 72.2
Lsat_1_v5_gn_4_152121 Lactuca sativa HOM05D004251 ORTHO05D005010 1.6e-88 329.7 212 72.6
FAN26G0083 Fragaria x ananassa HOM05D004251 ORTHO05D005010 2.2e-88 329.3 213 74.6
Lj1g0003281 Lotus japonicus HOM05D004251 ORTHO05D005010 2.2e-88 329.3 213 72.3
LjContig00448g0013547 Lotus japonicus HOM05D004251 ORTHO05D005010 2.2e-88 329.3 213 72.3
Rhsim10G0122600 Rhododendron simsii HOM05D004251 ORTHO05D005010 2.2e-88 329.3 210 74.8
CAN.G358.93 Capsicum annuum HOM05D004251 ORTHO05D005010 3.7e-88 328.6 213 71.8
AT5G49555 Arabidopsis thaliana HOM05D004251 ORTHO05D005010 4.8e-88 328.2 212 71.7
Sed0021773 Sechium edule HOM05D004251 ORTHO05D005010 8.2e-88 327.4 207 74.9
Thecc.01G035500 Theobroma cacao HOM05D004251 ORTHO05D005010 8.2e-88 327.4 209 74.6
TWI73G1034 Tripterygium wilfordii HOM05D004251 ORTHO05D005010 8.2e-88 327.4 212 73.1
Sp7g14220 Schrenkiella parvula HOM05D004251 ORTHO05D005010 1.1e-87 327.0 212 72.2
Duzib147G1661 Durio zibethinus HOM05D004251 ORTHO05D005010 1.8e-87 326.2 213 72.3
Psat4g093160 Pisum sativum HOM05D004251 ORTHO05D005010 1.8e-87 326.2 212 71.7
CANSAT01G2654 Cannabis sativa HOM05D004251 ORTHO05D005010 2.4e-87 325.9 209 76.1
Ciclev10025284m.g Citrus clementina HOM05D004251 ORTHO05D005010 3.1e-87 325.5 212 72.2
MSTRG.2762 Avicennia marina HOM05D004251 ORTHO05D005010 4.1e-87 325.1 209 71.8
MELO3C016373.2 Cucumis melo HOM05D004251 ORTHO05D005010 5.3e-87 324.7 213 71.8
Atru.chr3.575 Acer truncatum HOM05D004251 ORTHO05D005010 6.9e-87 324.3 211 72.0
unitig_21.g20954 Utricularia gibba HOM05D004251 ORTHO05D005010 9.0e-87 323.9 207 72.9
Carub.0008s2797 Capsella rubella HOM05D004251 ORTHO05D005010 1.2e-86 323.6 212 70.8
Oeu041447.3 Olea europaea HOM05D004251 ORTHO05D005010 1.2e-86 323.6 208 71.6
CsaV3_4G005780 Cucumis sativus L. HOM05D004251 ORTHO05D005010 1.5e-86 323.2 213 71.4
BcaC09g50275 Brassica carinata HOM05D004251 ORTHO05D005010 3.4e-86 322.0 211 70.6
Hma1.2p1_0400F.1_g144420 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 7.7e-86 320.9 213 71.4
Nn5g29614 Nelumbo nucifera HOM05D004251 ORTHO05D005010 1.3e-85 320.1 208 73.6
PSO170G5998 Papaver somniferum HOM05D004251 ORTHO05D005010 1.3e-85 320.1 208 72.6
arahy.Tifrunner.gnm1.ann1.BIDD64 Arachis hypogaea HOM05D004251 ORTHO05D005010 2.9e-85 318.9 213 69.5
CARHR281200 Cardamine hirsuta HOM05D004251 ORTHO05D005010 3.8e-85 318.5 206 71.8
Oeu033644.1 Olea europaea HOM05D004251 ORTHO05D005010 3.8e-85 318.5 204 72.5
PSO210G3399 Papaver somniferum HOM05D004251 ORTHO05D005010 5.0e-85 318.2 208 71.6
COL.COLO4_22077 Corchorus olitorius HOM05D004251 ORTHO05D005010 6.5e-85 317.8 209 72.7
Gohir.A02G165600 Gossypium hirsutum HOM05D004251 ORTHO05D005010 6.5e-85 317.8 212 70.8
Gorai.003G014700 Gossypium raimondii HOM05D004251 ORTHO05D005010 6.5e-85 317.8 212 70.8
arahy.Tifrunner.gnm1.ann1.05783X Arachis hypogaea HOM05D004251 ORTHO05D005010 8.5e-85 317.4 213 69.5
Eucgr.D01664 Eucalyptus grandis HOM05D004251 ORTHO05D005010 8.5e-85 317.4 213 70.9
HPP92_017686 Vanilla planifolia HOM05D004251 ORTHO05D005010 8.5e-85 317.4 207 72.5
TPR.G18620 Trifolium pratense HOM05D004251 ORTHO05D005010 1.1e-84 317.0 211 71.1
CiPaw.02G018000 Carya illinoinensis HOM05D004251 ORTHO05D005010 1.9e-84 316.2 213 70.0
BolC1t02651H Brassica oleracea HOM05D004251 ORTHO05D005010 2.5e-84 315.8 220 68.2
Sabra07G0022400 Salix brachista HOM05D004251 ORTHO05D005010 4.2e-84 315.1 270 60.4
BraA01t02077Z Brassica rapa HOM05D004251 ORTHO05D005010 5.5e-84 314.7 220 68.2
QL06p046194 Quercus lobata HOM05D004251 ORTHO05D005010 5.5e-84 314.7 213 69.5
C01p27030 Brassica napus HOM05D004251 ORTHO05D005010 7.2e-84 314.3 220 67.7
Ca_12487_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 7.2e-84 314.3 212 69.3
Gohir.D03G014400 Gossypium hirsutum HOM05D004251 ORTHO05D005010 9.4e-84 313.9 212 69.8
Medtr1g034450 Medicago truncatula HOM05D004251 ORTHO05D005010 1.6e-83 313.2 212 69.8
PGR102G0408 Punica granatum HOM05D004251 ORTHO05D005010 1.6e-83 313.2 207 70.0
Dinv39988 Davidia involucrata HOM05D004251 ORTHO05D005010 3.6e-83 312.0 213 70.4
Os12g0631800 Oryza sativa ssp. japonica HOM05D004251 ORTHO05D005010 3.6e-83 312.0 208 71.2
GSVIVG01018957001 Vitis vinifera HOM05D004251 ORTHO05D005010 6.1e-83 311.2 212 69.3
CDE04G2049 Ceratophyllum demersum HOM05D004251 ORTHO05D005010 1.8e-82 309.7 209 68.9
ATR0733G178 Amborella trichopoda HOM05D004251 ORTHO05D005010 2.3e-82 309.3 207 69.6
A01p21680 Brassica napus HOM05D004251 ORTHO05D005010 3.0e-82 308.9 212 69.3
Prupe.7G154900 Prunus persica HOM05D004251 ORTHO05D005010 5.1e-82 308.1 212 68.9
CsaV3_6G046240 Cucumis sativus L. HOM05D004251 ORTHO05D005010 6.7e-82 307.8 209 67.5
Sed0017564 Sechium edule HOM05D004251 ORTHO05D005010 6.7e-82 307.8 209 68.9
ClCG01G019560 Citrullus lanatus HOM05D004251 ORTHO05D005010 1.5e-81 306.6 207 68.6
Nitab4.5_0000178g0050 Nicotiana tabacum HOM05D004251 ORTHO05D005010 2.2e-80 302.8 213 68.5
AagrBONN_evm.TU.Sc2ySwM_228.727 Anthoceros agrestis HOM05D004251 ORTHO05D005010 1.9e-76 289.7 210 63.3
SEGI_19545 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 1.9e-76 289.7 206 66.0
Mapoly0014s0043 Marchantia polymorpha HOM05D004251 ORTHO05D005010 3.9e-74 282.0 208 61.5
Pp3c15_20190 Physcomitrium patens HOM05D004251 ORTHO05D005010 3.9e-74 282.0 208 63.0
SMO358G0577 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 3.1e-71 272.3 209 60.3
Peaxi162Scf00366g00011 Petunia axillaris HOM05D004251 ORTHO05D005010 1.2e-70 270.4 212 62.3
Cpa.g.sc6.114 Carica papaya HOM05D004251 ORTHO05D005010 2.6e-70 269.2 212 62.3
SMO194G0022 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 3.5e-70 268.9 209 59.3
Atru.chr3.571 Acer truncatum HOM05D004251 ORTHO05D005010 2.2e-69 266.2 172 74.4
ClCG07G008350 Citrullus lanatus HOM05D004251 ORTHO05D005010 2.9e-69 265.8 209 62.2
vmacro12726 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 8.8e-66 254.2 416 38.7
BcaNung00241 Brassica carinata HOM05D004251 ORTHO05D005010 3.7e-64 248.8 212 58.0
Haze_15087 Corylus avellana HOM05D004251 ORTHO05D005010 9.8e-57 224.2 242 50.8
Zm00001eb232720 Zea mays HOM05D004251 ORTHO05D005010 4.8e-56 221.9 212 54.7
Dinv13532 Davidia involucrata HOM05D004251 ORTHO05D005010 1.5e-52 210.3 134 75.4
SGA_v2.0_scaffold614G53203 Striga asiatica HOM05D004251 ORTHO05D005010 8.6e-45 184.5 96 82.3
Hund13978 Selenicereus undatus HOM05D004251 ORTHO05D005010 2.8e-43 179.5 106 74.5
PRCOL_00003920 Prasinoderma coloniale HOM05D004251 ORTHO05D005010 6.8e-42 174.9 206 42.2
BcaC09g50281 Brassica carinata HOM05D004251 ORTHO05D005010 1.4e-39 167.2 170 50.6
Phvul.003G073200 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 7.3e-36 154.8 78 87.2
PGSC0003DMG402003505 Solanum tuberosum HOM05D004251 ORTHO05D005010 4.9e-32 142.1 84 76.2
MELO3C007827.2 Cucumis melo HOM05D004251 ORTHO05D005010 2.0e-30 136.7 145 49.7
TAR625G0258 Trochodendron aralioides HOM05D004251 ORTHO05D005010 1.0e-29 134.4 72 86.1
Oeu056756.2 Olea europaea HOM05D004251 ORTHO05D005010 7.3e-20 101.7 54 83.3
Thecc.01G000700 Theobroma cacao HOM05D004251 ORTHO05D005010 1.5e-17 94.0 90 58.9
Oeu009415.3 Olea europaea HOM05D004251 ORTHO05D005010 2.3e-13 80.1 40 82.5
SalBow1G7108 Salvia bowleyana HOM05D004251 ORTHO05D005010 8.6e-13 78.2 43 74.4
SalBow7G0441 Salvia bowleyana HOM05D000973 ORTHO05D000652 2.4e-07 60.1 38 65.8
Cre16.g651923 Chlamydomonas reinhardtii HOM05D006126 ORTHO05D007792 3.5e-06 56.2 207 24.2


User provided reference genes

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