Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.3e-77 291.6 144 100.0
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.2e-42 176.8 87 100.0
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.6e-37 159.1 87 90.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.9e-36 155.6 136 59.6
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.5e-32 143.3 85 80.0
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.5e-32 143.3 85 80.0
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.5e-32 143.3 85 80.0
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 1.6e-31 139.8 85 78.8
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.8e-31 139.0 87 77.0
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.8e-31 139.0 87 75.9
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 3.6e-31 138.7 88 73.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.7e-31 138.3 85 77.6
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.7e-31 138.3 87 77.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.2e-31 137.9 85 77.6
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.2e-31 137.9 85 77.6
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 8.1e-31 137.5 87 78.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 8.1e-31 137.5 85 75.3
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 8.1e-31 137.5 86 79.1
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.1e-30 137.1 85 77.6
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.1e-30 137.1 85 77.6
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.1e-30 137.1 85 77.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.1e-30 137.1 85 78.8
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.1e-30 137.1 118 61.9
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.4e-30 136.7 87 74.7
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.4e-30 136.7 85 78.8
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.4e-30 136.7 85 78.8
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.8e-30 136.3 85 77.6
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.8e-30 136.3 85 77.6
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.8e-30 136.3 87 75.9
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 2.4e-30 136.0 85 77.6
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.4e-30 136.0 86 75.6
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.4e-30 136.0 85 77.6
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 3.1e-30 135.6 85 75.3
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.1e-30 135.6 85 74.1
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.1e-30 135.6 85 80.0
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 4.0e-30 135.2 87 78.2
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 4.0e-30 135.2 87 78.2
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.0e-30 135.2 85 78.8
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 4.0e-30 135.2 86 77.9
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 4.0e-30 135.2 134 57.5
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.0e-30 135.2 85 80.0
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 5.2e-30 134.8 87 75.9
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 5.2e-30 134.8 87 74.7
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.9e-30 134.0 85 77.6
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 8.9e-30 134.0 85 77.6
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 8.9e-30 134.0 85 76.5
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.2e-29 133.7 85 78.8
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.2e-29 133.7 87 77.0
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.2e-29 133.7 87 72.4
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.2e-29 133.7 85 76.5
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.5e-29 133.3 85 77.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-29 133.3 85 77.6
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-29 133.3 85 77.6
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.5e-29 133.3 87 74.7
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.5e-29 133.3 85 77.6
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.5e-29 133.3 87 73.6
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.5e-29 133.3 85 76.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.0e-29 132.9 85 76.5
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.0e-29 132.9 85 75.3
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.0e-29 132.9 85 75.3
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.0e-29 132.9 86 76.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.6e-29 132.5 85 76.5
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.6e-29 132.5 85 75.3
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.6e-29 132.5 85 72.9
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.4e-29 132.1 86 73.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.4e-29 132.1 85 74.1
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 3.4e-29 132.1 85 76.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.4e-29 132.1 85 77.6
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 5.8e-29 131.3 95 69.5
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 7.6e-29 131.0 84 72.6
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 9.9e-29 130.6 86 70.9
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 9.9e-29 130.6 85 74.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-28 130.2 85 76.5
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.3e-28 130.2 87 72.4
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.2e-28 129.4 109 63.3
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 2.9e-28 129.0 85 70.6
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.9e-28 129.0 85 72.9
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.9e-28 129.0 85 72.9
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.8e-28 128.6 85 74.1
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.8e-28 128.6 85 74.1
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 3.8e-28 128.6 85 74.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 3.8e-28 128.6 87 73.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 4.9e-28 128.3 87 70.1
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 4.9e-28 128.3 77 77.9
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 4.9e-28 128.3 87 72.4
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.1e-27 127.1 85 72.9
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.1e-27 127.1 85 70.6
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.9e-27 126.3 87 70.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-27 126.3 87 70.1
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-27 126.3 87 70.1
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.9e-27 126.3 87 70.1
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.9e-27 126.3 87 70.1
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.4e-27 125.9 88 70.5
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 3.2e-27 125.6 83 67.5
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 4.1e-27 125.2 85 70.6
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.1e-27 124.4 83 72.3
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.1e-27 124.4 85 70.6
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 9.2e-27 124.0 89 68.5
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 9.2e-27 124.0 86 73.3
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.2e-26 123.6 87 69.0
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.2e-26 123.6 88 70.5
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.2e-26 123.6 84 76.2
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.1e-26 122.9 87 67.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-26 122.5 87 67.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 3.5e-26 122.1 84 70.2
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.5e-26 122.1 87 66.7
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 4.6e-26 121.7 83 73.5
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.0e-26 121.3 87 66.7
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 6.0e-26 121.3 85 67.1
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 6.0e-26 121.3 85 69.4
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 6.0e-26 121.3 87 70.1
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 7.8e-26 120.9 87 70.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 7.8e-26 120.9 87 70.1
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-25 119.8 83 72.3
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 1.7e-25 119.8 83 72.3
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.7e-25 119.8 84 66.7
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.3e-25 119.4 87 70.1
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.3e-25 119.4 87 66.7
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 3.0e-25 119.0 83 72.3
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.0e-25 119.0 87 69.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 5.1e-25 118.2 87 67.8
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 6.6e-25 117.9 87 67.8
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 8.7e-25 117.5 88 63.6
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-24 117.1 83 71.1
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.9e-24 116.3 83 71.1
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.3e-24 115.5 90 66.7
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 4.3e-24 115.2 88 64.8
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 4.3e-24 115.2 88 64.8
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 4.3e-24 115.2 75 72.0
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 5.6e-24 114.8 88 65.9
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 7.3e-24 114.4 86 65.1
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 8.1e-23 110.9 86 65.1
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 8.1e-23 110.9 85 64.7
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.8e-22 109.8 83 66.3
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 9.0e-22 107.5 94 58.5
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.5e-21 106.7 79 69.6
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 2.0e-21 106.3 93 58.1
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 2.6e-21 105.9 74 71.6
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.7e-20 103.2 75 65.3
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 8.4e-20 100.9 59 76.3
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.4e-19 99.4 89 61.8
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 2.7e-18 95.9 85 56.5
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.7e-18 95.9 96 54.2
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.7e-17 93.2 84 58.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.3e-16 89.0 52 80.8
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-15 87.0 46 87.0
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.2e-15 84.7 83 57.8
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.8e-14 83.2 52 73.1
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.0e-14 82.0 46 82.6
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 5.3e-14 81.6 58 65.5
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 2.3e-09 66.2 93 46.2
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 5.1e-09 65.1 33 81.8
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 2.1e-07 59.7 66 50.0
Pp3c17_17370 Physcomitrium patens HOM05D000094 ORTHO05D001056 8.1e-07 57.8 107 36.4


User provided reference genes

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