Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 5.5e-126 454.5 267 100.0
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 7.2e-118 427.6 267 91.8
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.3e-92 342.8 193 84.5
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.9e-89 333.2 192 83.9
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 4.6e-88 328.6 192 78.6
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 4.6e-88 328.6 191 78.0
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 5.1e-87 325.1 193 77.2
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.1e-86 323.9 190 78.4
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.9e-86 323.2 192 77.6
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 3.3e-86 322.4 190 78.4
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 7.3e-86 321.2 192 78.1
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 7.3e-86 321.2 192 76.0
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 7.3e-86 321.2 190 77.9
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 9.6e-86 320.9 192 76.6
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.2e-85 320.5 190 76.3
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.2e-85 320.5 186 78.0
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.8e-85 319.3 190 78.4
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 3.6e-85 318.9 188 78.2
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 3.6e-85 318.9 193 76.2
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 8.1e-85 317.8 194 76.3
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 1.1e-84 317.4 192 75.5
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-84 317.4 190 77.4
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.1e-84 317.4 190 77.9
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.1e-84 317.4 193 75.1
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.8e-84 316.6 193 74.6
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.4e-84 316.2 190 76.3
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 5.2e-84 315.1 184 77.7
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.2e-84 315.1 190 76.8
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 6.8e-84 314.7 193 75.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 2.0e-83 313.2 192 75.0
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.4e-83 312.4 192 76.0
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 3.4e-83 312.4 192 75.5
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 3.4e-83 312.4 192 76.0
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 4.4e-83 312.0 190 75.3
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 4.4e-83 312.0 192 76.6
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 4.4e-83 312.0 192 76.0
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 4.4e-83 312.0 192 76.6
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 4.4e-83 312.0 189 76.2
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 7.6e-83 311.2 191 75.9
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.3e-82 310.5 190 75.3
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.3e-82 310.5 192 75.0
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.9e-82 309.3 183 76.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 2.9e-82 309.3 192 75.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 3.8e-82 308.9 192 74.5
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 3.8e-82 308.9 192 74.5
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 6.4e-82 308.1 184 75.0
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 6.4e-82 308.1 184 75.0
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 6.4e-82 308.1 192 76.0
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 8.4e-82 307.8 185 75.7
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 1.1e-81 307.4 184 75.0
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.4e-81 307.0 184 75.5
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.4e-81 307.0 184 75.0
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 1.4e-81 307.0 190 74.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.9e-81 306.6 184 75.5
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.9e-81 306.6 184 75.0
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.4e-81 306.2 183 77.6
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.4e-81 306.2 192 75.0
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 2.4e-81 306.2 192 74.5
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 3.2e-81 305.8 192 74.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 4.2e-81 305.4 184 75.0
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 4.2e-81 305.4 192 75.0
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.4e-81 305.1 185 74.6
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 9.3e-81 304.3 183 76.5
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 9.3e-81 304.3 192 74.0
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 9.3e-81 304.3 192 74.5
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 9.3e-81 304.3 192 76.0
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.2e-80 303.9 192 74.0
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-80 303.9 190 74.7
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 2.1e-80 303.1 192 74.5
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-80 303.1 192 74.5
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.7e-80 302.8 192 74.0
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.6e-80 302.0 192 74.5
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 4.6e-80 302.0 192 73.4
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 4.6e-80 302.0 191 74.9
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 4.6e-80 302.0 192 72.4
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 7.8e-80 301.2 190 73.2
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 7.8e-80 301.2 190 74.7
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.0e-79 300.8 184 75.0
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.3e-79 299.7 186 73.7
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 3.0e-79 299.3 184 74.5
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 3.9e-79 298.9 194 72.7
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 5.1e-79 298.5 186 76.3
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.1e-78 297.4 180 76.1
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.1e-78 297.4 183 74.9
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 1.1e-78 297.4 191 71.7
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.5e-78 297.0 180 76.1
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.9e-78 296.6 187 72.2
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 2.5e-78 296.2 185 73.0
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-78 296.2 185 73.0
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 5.6e-78 295.0 191 72.8
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.6e-78 295.0 193 70.5
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 5.6e-78 295.0 186 72.6
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 3.6e-77 292.4 194 71.6
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 4.8e-77 292.0 193 71.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.8e-76 290.0 187 70.6
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 4.0e-76 288.9 190 70.5
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 9.0e-76 287.7 176 76.7
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.6e-75 286.2 183 71.6
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.8e-74 282.3 186 71.0
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.4e-73 280.4 191 69.1
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 5.4e-73 278.5 184 70.1
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 3.5e-72 275.8 191 67.0
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 3.0e-71 272.7 187 66.3
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.9e-70 270.0 189 68.3
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 1.3e-69 267.3 155 78.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.8e-69 266.2 190 66.8
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.8e-69 266.2 192 67.7
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 6.2e-69 265.0 191 67.0
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.1e-68 264.2 160 76.9
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 4.0e-68 262.3 153 78.4
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.5e-67 260.4 167 71.9
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 3.4e-67 259.2 184 64.7
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.4e-66 255.0 161 72.7
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.4e-66 254.6 192 65.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.9e-65 253.4 186 62.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 3.2e-65 252.7 197 65.0
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.8e-60 236.9 196 60.7
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 4.2e-57 225.7 175 53.1
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 2.1e-56 223.4 194 59.3
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 7.9e-56 221.5 188 58.0
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 4.3e-54 215.7 141 73.8
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.4e-52 210.7 133 70.7
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.4e-52 209.9 175 54.9
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 4.2e-49 199.1 128 69.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.2e-41 172.9 152 58.6
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.6e-40 169.5 103 76.7
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.8e-39 167.2 102 76.5
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 6.3e-37 158.7 104 69.2
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 3.9e-31 139.4 85 71.8
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 9.7e-30 134.8 88 68.2
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.7e-30 134.8 90 68.9
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.6e-27 126.7 193 40.4
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.9e-25 120.6 173 39.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-24 117.1 101 60.4
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 7.5e-22 108.6 190 33.7
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 2.4e-20 103.6 189 32.8
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.1e-20 103.2 189 32.8
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 7.0e-20 102.1 187 32.6
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.6e-19 100.9 69 71.0
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 1.0e-18 98.2 189 31.7
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 1.7e-18 97.4 139 45.3
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.1e-17 94.7 188 30.9
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.2e-16 91.3 175 32.6
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.1e-16 90.5 117 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.0e-15 88.2 159 34.0
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.0e-15 88.2 128 38.3
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.8e-15 85.5 53 73.6
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 2.6e-14 83.6 181 33.1
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 4.8e-13 79.3 127 36.2
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.8e-12 77.4 54 70.4
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 9.1e-12 75.1 209 28.2
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 2.0e-11 73.9 185 31.4
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.5e-11 73.2 44 70.5
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.2e-10 70.5 44 70.5
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.9e-09 67.4 111 35.1
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 7.2e-09 65.5 84 40.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 2.7e-08 63.5 99 36.4
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 4.7e-08 62.8 201 24.9
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 3.0e-07 60.1 195 28.2


User provided reference genes

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