Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 0.0e+00 2392.8 1210 100.0
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 0.0e+00 2014.2 1135 89.8
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1453.0 1225 64.2
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 0.0e+00 1178.7 1233 53.4
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.5e-303 1045.8 1252 49.8
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 6.6e-219 765.4 1274 40.7
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 8.1e-217 758.4 1305 40.5
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 2.2e-214 750.4 1313 39.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 1.0e-211 741.5 1318 38.4
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 1.8e-211 740.7 1304 40.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 3.0e-211 740.0 1304 40.0
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 2.5e-210 736.9 1304 40.0
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 5.6e-210 735.7 1314 39.0
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 2.4e-208 730.3 1315 38.3
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 1.2e-207 728.0 1324 38.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 4.5e-207 726.1 1315 37.9
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 1.0e-206 724.9 1319 38.9
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.7e-206 724.2 1331 38.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 3.8e-206 723.0 1311 38.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 7.1e-205 718.8 1316 38.0
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.7e-204 716.8 1312 37.8
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 2.3e-203 713.8 1285 40.0
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 1.3e-201 708.0 1308 38.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 1.8e-200 704.1 1310 37.6
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 6.9e-200 702.2 1312 38.3
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 2.0e-199 700.7 1325 38.0
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 2.2e-198 697.2 1302 37.3
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.1e-197 694.9 1319 38.1
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.4e-197 694.5 1341 37.1
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 2.5e-197 693.7 1308 37.8
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.9e-194 684.1 1160 39.8
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.3e-194 683.3 1269 37.4
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.6e-193 681.0 1311 37.5
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 8.2e-193 678.7 1305 36.7
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.0e-190 671.8 1235 37.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 1.4e-189 667.9 1075 41.0
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.5e-189 667.2 1273 36.9
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.2e-189 666.4 1305 36.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.2e-188 664.8 1307 36.2
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 7.9e-188 662.1 1308 36.1
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.8e-187 661.0 1289 36.1
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 4.8e-185 652.9 1292 36.2
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.8e-184 651.0 1293 35.4
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 9.1e-184 648.7 1284 36.6
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.5e-183 647.9 1343 35.8
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 2.0e-183 647.5 1430 34.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 2.6e-183 647.1 1302 36.1
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 3.2e-181 640.2 1202 37.4
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.2e-180 638.3 1155 37.6
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.6e-180 636.7 1286 34.8
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 4.7e-180 636.3 1229 36.5
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 4.7e-180 636.3 1182 36.1
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 3.0e-179 633.6 1156 38.4
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.1e-178 631.7 1256 36.0
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 9.7e-178 628.6 1163 36.7
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.8e-177 627.1 1303 35.2
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 3.1e-176 623.6 1165 36.3
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 4.1e-176 623.2 1267 35.4
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.0e-175 620.9 1290 34.5
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 4.5e-175 619.8 1169 37.0
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.0e-174 618.6 1167 38.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.7e-174 617.8 1286 35.2
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.2e-174 617.5 1230 36.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.2e-174 617.5 1287 34.7
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.5e-173 614.0 1133 37.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 5.5e-173 612.8 1180 36.8
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 2.1e-172 610.9 1189 36.6
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 3.6e-172 610.1 1306 33.3
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.0e-171 608.6 1227 36.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.8e-171 607.8 1292 35.2
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 3.0e-171 607.1 1177 35.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 9.7e-170 602.1 1212 34.6
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 3.8e-166 590.1 1123 37.1
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 6.5e-166 589.3 1280 35.4
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 6.8e-163 579.3 1140 36.3
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.0e-162 577.8 1315 32.9
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.1e-160 572.0 1237 34.0
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 5.0e-158 563.1 1230 33.9
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.0e-155 555.4 1327 32.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 4.4e-154 550.1 1210 33.6
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 9.2e-152 542.3 1119 34.3
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.2e-138 498.8 1017 34.0
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.9e-136 491.5 1195 31.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.2e-135 488.8 1213 32.0
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 2.6e-130 471.1 1325 30.4
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 4.4e-130 470.3 1082 32.6
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 4.9e-129 466.8 1023 32.6
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 2.7e-127 461.1 987 33.5
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.6e-122 444.5 1180 30.6
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 2.5e-117 427.9 1111 30.7
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.0e-111 406.8 289 74.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.6e-108 398.7 696 39.1
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.7e-102 378.6 696 37.2
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 8.4e-97 359.8 643 39.2
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.4e-96 359.0 265 73.2
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 9.6e-93 346.3 578 38.9
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 2.1e-92 345.1 698 37.0
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.0e-89 336.3 576 38.0
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 4.2e-88 330.9 554 39.7
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.3e-86 325.1 823 30.4
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 6.7e-86 323.6 711 35.0
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 5.9e-82 310.5 756 33.1
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 7.6e-82 310.1 698 35.1
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-81 309.7 751 31.4
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.8e-78 298.9 654 30.4
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.7e-76 291.2 873 27.3
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 1.4e-72 279.3 625 35.5
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 2.2e-68 265.4 353 41.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 2.0e-61 242.3 681 31.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.2e-57 228.8 430 32.6
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.5e-56 225.3 384 36.7
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.6e-50 206.1 624 30.8
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.0e-49 203.4 933 25.7
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 4.4e-21 108.2 268 30.2
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 7.5e-21 107.5 575 27.0
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.7e-17 96.3 374 25.7
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.0e-17 95.5 374 25.7
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.3e-14 85.9 131 35.1
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 5.2e-14 84.7 580 24.7
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 7.5e-13 80.9 142 34.5
Ah.03g144300 Amaranthus hybridus HOM05D001096 ORTHO05D006357 1.2e-10 73.6 128 36.7
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.2e-10 73.6 149 35.6
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 2.7e-10 72.4 140 33.6
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.5e-08 65.9 119 40.3
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 5.6e-08 64.7 578 23.0
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.2e-07 63.5 385 24.2
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.1e-07 62.8 385 24.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.8e-07 62.4 188 27.1
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-06 60.5 87 39.1
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 2.3e-06 59.3 385 23.9
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 3.1e-06 58.9 382 25.4
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 3.1e-06 58.9 382 25.4
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 4.0e-06 58.5 418 24.9
Ah.07g201650 Amaranthus hybridus HOM05D000058 ORTHO05D000077 5.2e-06 58.2 92 37.0


User provided reference genes

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