Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.5e-75 285.0 160 100.0
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.8e-72 275.4 160 97.5
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.1e-57 226.9 157 83.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 8.9e-47 190.7 161 73.3
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 8.4e-45 184.1 155 67.7
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 5.4e-44 181.4 147 70.7
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 3.9e-42 175.3 153 65.4
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.9e-41 172.9 154 65.6
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 2.5e-41 172.6 154 64.3
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.2e-40 170.2 155 63.9
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.2e-40 170.2 155 63.9
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.2e-40 170.2 160 64.4
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.6e-40 169.9 155 63.9
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.6e-40 169.9 148 68.2
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 3.6e-40 168.7 153 64.7
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 4.7e-40 168.3 157 62.4
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 6.2e-40 167.9 153 65.4
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.1e-39 167.2 135 65.9
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.4e-39 166.8 148 64.9
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.4e-39 166.8 154 65.6
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 2.4e-39 166.0 158 63.9
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.1e-39 165.6 154 62.3
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 5.3e-39 164.9 129 71.3
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.3e-39 164.9 159 60.4
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 6.9e-39 164.5 163 61.3
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 6.9e-39 164.5 152 61.2
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 9.0e-39 164.1 161 62.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.2e-38 163.7 148 62.8
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 1.2e-38 163.7 135 68.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.5e-38 163.3 135 67.4
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 1.5e-38 163.3 135 67.4
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.5e-38 163.3 135 67.4
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.5e-38 163.3 155 60.6
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 4.4e-38 161.8 152 61.8
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 4.4e-38 161.8 138 66.7
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 5.8e-38 161.4 153 62.1
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.9e-37 159.1 134 66.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.8e-37 158.7 154 59.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 4.9e-37 158.3 128 68.8
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 4.9e-37 158.3 135 67.4
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 4.9e-37 158.3 160 57.5
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.9e-37 158.3 146 64.4
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 6.4e-37 157.9 135 69.6
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 8.4e-37 157.5 155 62.6
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.1e-36 157.1 154 61.7
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.4e-36 156.8 135 66.7
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.4e-36 156.8 148 60.1
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.9e-36 156.4 116 74.1
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.9e-36 156.4 156 59.0
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.4e-36 156.0 119 71.4
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.4e-36 156.0 147 59.9
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 3.2e-36 155.6 138 65.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 4.2e-36 155.2 115 75.7
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 4.2e-36 155.2 132 67.4
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 5.4e-36 154.8 135 65.9
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.4e-36 154.8 135 65.9
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.4e-36 154.8 135 65.9
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 9.3e-36 154.1 153 60.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-35 153.7 141 65.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.6e-35 153.3 112 74.1
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.6e-35 153.3 112 73.2
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-35 153.3 145 60.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 2.1e-35 152.9 114 72.8
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.1e-35 152.9 102 80.4
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 2.7e-35 152.5 124 67.7
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 2.7e-35 152.5 124 67.7
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.7e-35 152.5 140 63.6
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 3.5e-35 152.1 139 62.6
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.6e-35 151.8 126 67.5
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 6.0e-35 151.4 112 72.3
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 6.0e-35 151.4 112 71.4
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 7.8e-35 151.0 117 70.1
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 7.8e-35 151.0 112 71.4
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 7.8e-35 151.0 112 71.4
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 7.8e-35 151.0 144 59.7
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 7.8e-35 151.0 112 71.4
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.0e-34 150.6 117 70.9
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.0e-34 150.6 117 70.1
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.3e-34 150.2 150 57.3
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.7e-34 149.8 122 68.9
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.7e-34 149.8 120 69.2
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.3e-34 149.4 155 57.4
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.3e-34 149.4 133 63.9
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.3e-34 149.4 112 71.4
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.9e-34 148.7 148 57.4
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 5.1e-34 148.3 116 69.8
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.6e-34 147.9 142 62.7
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 6.6e-34 147.9 134 61.9
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 6.6e-34 147.9 116 69.8
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 4.3e-33 145.2 109 68.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 5.6e-33 144.8 114 67.5
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 7.3e-33 144.4 111 70.3
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 9.6e-33 144.1 152 54.6
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 9.6e-33 144.1 152 54.6
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.1e-32 142.9 108 73.1
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 2.8e-32 142.5 108 72.2
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.8e-32 142.5 135 61.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.8e-32 141.7 114 69.3
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.1e-31 140.6 112 68.8
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-31 140.6 135 60.7
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.4e-31 140.2 115 70.4
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.4e-31 139.4 117 66.7
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.3e-31 138.3 118 65.3
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 9.0e-31 137.5 107 72.9
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.2e-30 137.1 135 60.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.5e-30 136.7 135 60.7
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 4.5e-30 135.2 141 56.7
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 9.9e-30 134.0 124 61.3
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-29 132.9 104 70.2
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.9e-29 131.7 141 55.3
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 4.9e-29 131.7 141 56.7
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 1.9e-28 129.8 142 50.7
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 4.2e-28 128.6 120 62.5
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.1e-27 126.3 124 55.6
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 6.0e-27 124.8 108 62.0
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 6.0e-27 124.8 85 78.8
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 7.9e-27 124.4 111 60.4
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.8e-26 123.2 111 60.4
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 2.3e-26 122.9 84 77.4
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 8.7e-26 120.9 108 63.0
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.1e-25 120.6 87 73.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 4.8e-24 115.2 205 41.0
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.8e-23 113.2 116 57.8
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 2.4e-23 112.8 92 66.3
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 6.9e-23 111.3 163 46.6
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.4e-22 109.0 117 54.7
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.8e-22 108.2 111 54.1
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 5.8e-22 108.2 220 38.2
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 4.9e-21 105.1 136 44.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.9e-20 103.2 113 51.3
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.9e-17 93.2 87 63.2
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.5e-17 92.8 99 56.6
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 7.4e-17 91.3 123 50.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 9.6e-17 90.9 139 45.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-16 90.5 61 82.0
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-16 90.1 102 56.9
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.2e-14 84.0 102 45.1
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 4.5e-14 82.0 94 48.9
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.9e-13 78.6 114 49.1
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.2e-12 75.5 55 65.5
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-11 73.6 55 65.5
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.1e-11 73.2 52 71.2
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.5e-11 72.4 85 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 3.5e-11 72.4 122 39.3
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.9e-11 71.2 46 84.8
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.0e-10 70.9 48 68.8
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.3e-10 69.7 49 79.6
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.1e-07 60.8 95 46.3


User provided reference genes

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