Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 0.0e+00 1196.8 667 100.0
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 2.1e-299 1031.9 662 89.4
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 2.8e-203 712.6 633 66.7
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.3e-168 597.4 622 61.1
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 8.6e-152 541.6 646 55.3
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 7.8e-145 518.5 648 52.8
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.9e-135 487.3 641 49.5
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.6e-134 484.2 626 49.0
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.1e-134 483.8 646 50.0
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.4e-132 476.1 651 48.8
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 4.4e-132 476.1 644 49.1
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 9.9e-132 474.9 650 47.7
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.9e-131 472.6 636 46.7
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.1e-130 471.5 681 45.2
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.4e-130 471.1 666 46.2
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.4e-130 469.2 636 46.7
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 9.3e-130 468.4 442 60.9
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-129 468.0 336 74.7
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.2e-129 468.0 633 48.3
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 1.2e-129 468.0 450 61.8
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 2.7e-129 466.8 661 46.9
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 4.6e-129 466.1 633 49.4
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 4.6e-129 466.1 629 49.8
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 6.0e-129 465.7 644 48.0
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 6.0e-129 465.7 538 53.9
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 7.8e-129 465.3 630 46.0
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.9e-128 463.0 662 46.4
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 6.6e-128 462.2 650 45.8
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 8.7e-128 461.8 642 47.0
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.9e-127 460.7 662 46.4
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 3.3e-127 459.9 648 47.8
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 4.3e-127 459.5 661 47.4
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.1e-126 457.2 651 48.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 2.8e-126 456.8 383 62.9
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 8.1e-126 455.3 418 62.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 3.1e-125 453.4 648 48.8
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 4.0e-125 453.0 617 49.1
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 6.9e-125 452.2 445 58.0
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 2.0e-124 450.7 637 46.8
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 2.4e-122 443.7 637 46.8
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 5.4e-122 442.6 612 49.7
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 7.1e-122 442.2 646 45.8
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 1.6e-121 441.0 379 64.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.6e-121 441.0 343 69.1
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.7e-121 440.3 639 44.6
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 6.0e-121 439.1 617 48.5
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 7.9e-121 438.7 668 44.5
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 3.0e-120 436.8 633 46.1
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.0e-120 436.8 655 47.6
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 4.8e-118 429.5 638 43.9
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.1e-117 428.3 639 45.1
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 1.4e-117 427.9 622 46.6
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 6.9e-117 425.6 606 45.9
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 4.9e-115 419.5 653 45.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 6.4e-115 419.1 611 44.7
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.1e-114 418.3 634 44.6
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 5.5e-114 416.0 631 43.6
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 3.5e-113 413.3 552 46.9
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.0e-112 411.8 645 43.7
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.9e-112 409.8 651 45.3
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.9e-111 407.5 642 43.5
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 2.5e-111 407.1 632 44.1
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 5.6e-111 406.0 644 45.3
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.1e-110 404.1 644 42.1
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 1.1e-109 401.7 609 43.7
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.8e-109 401.0 666 41.4
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.4e-109 400.6 400 57.0
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 3.1e-109 400.2 591 45.5
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 4.0e-109 399.8 400 57.0
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 6.9e-109 399.1 640 43.9
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 9.0e-109 398.7 640 43.1
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 4.5e-108 396.4 713 41.4
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.0e-107 395.2 756 38.6
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.7e-107 394.4 620 45.3
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.7e-107 394.4 644 43.2
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.2e-107 394.0 689 42.4
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.5e-106 390.6 406 56.7
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 2.5e-106 390.6 649 42.2
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 3.2e-106 390.2 645 43.1
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 4.2e-106 389.8 622 42.3
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 5.5e-106 389.4 447 54.6
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 6.0e-105 386.0 382 58.9
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 3.0e-104 383.6 645 42.2
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 3.3e-103 380.2 639 41.5
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.7e-103 379.4 457 52.7
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.7e-103 379.4 457 52.7
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.7e-103 379.4 456 52.9
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.6e-102 377.9 634 42.6
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.1e-101 375.2 473 51.6
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.1e-101 373.2 653 42.0
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 5.3e-101 372.9 648 42.0
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.2e-100 371.7 327 61.8
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 3.8e-99 366.7 392 54.1
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.6e-97 361.3 637 39.6
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 2.7e-97 360.5 649 40.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.5e-95 354.8 386 54.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.9e-95 354.4 642 42.4
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.4e-93 348.2 637 40.3
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.8e-93 347.8 622 41.0
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 5.5e-90 336.3 551 43.0
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 5.1e-88 329.7 387 49.4
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 8.2e-86 322.4 649 38.7
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.7e-81 307.4 638 40.3
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.1e-58 232.3 319 44.8
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.6e-55 221.1 278 49.6
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 3.1e-53 214.2 438 36.5
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 9.2e-53 212.6 218 53.7
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 3.5e-52 210.7 437 33.9
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.5e-50 205.3 313 40.6
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 2.3e-48 198.0 375 38.4
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-47 195.7 287 43.2
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.4e-45 188.0 453 37.7
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 5.4e-45 186.8 125 72.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 3.5e-44 184.1 389 33.7
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.0e-43 182.6 225 49.3
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.0e-40 172.6 118 72.9
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.6e-39 167.9 112 74.1
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.3e-38 165.6 437 35.9
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 1.7e-38 165.2 118 70.3
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 9.2e-37 159.5 193 47.2
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 2.1e-33 148.3 113 69.0
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 4.7e-33 147.1 111 65.8
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 8.1e-33 146.4 422 34.1
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-31 142.5 112 65.2
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 5.1e-27 127.1 93 69.9
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.9e-26 125.2 139 56.1
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 6.2e-25 120.2 138 56.5
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 8.1e-25 119.8 139 56.1
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.3e-24 118.2 231 34.6
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 8.9e-24 116.3 89 61.8
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.2e-23 115.9 90 62.2
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.4e-23 114.0 110 48.2
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 4.1e-21 107.5 342 27.8
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 2.1e-20 105.1 353 30.9
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 1.2e-17 95.9 94 61.7
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 8.7e-11 73.2 113 43.4
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 4.8e-09 67.4 76 47.4
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.0e-08 64.3 48 66.7
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 9.9e-07 59.7 54 57.4
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.3e-06 59.3 44 61.4
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 4.9e-06 57.4 147 23.8


User provided reference genes

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