Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 4.8e-285 983.8 488 100.0
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 4.1e-244 847.8 488 87.9
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 1.4e-191 673.3 508 66.5
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 7.7e-134 481.5 467 54.4
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 1.5e-132 477.2 508 52.0
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 5.6e-124 448.7 519 48.0
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 2.8e-123 446.4 516 48.1
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 4.0e-122 442.6 471 50.7
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 1.3e-120 437.6 511 47.7
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 2.5e-116 423.3 500 48.4
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 4.7e-115 419.1 518 45.4
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 2.6e-113 413.3 515 46.0
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 2.9e-112 409.8 534 45.3
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 4.9e-112 409.1 512 45.9
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 1.1e-111 407.9 512 45.9
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.2e-110 404.4 507 45.2
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 2.7e-110 403.3 513 47.0
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 2.3e-109 400.2 513 44.6
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 3.0e-109 399.8 517 45.3
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 1.5e-108 397.5 524 44.7
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 4.7e-107 392.5 508 46.9
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 6.2e-107 392.1 509 46.6
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 1.4e-106 391.0 513 45.0
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 1.8e-106 390.6 468 46.4
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.8e-106 390.6 508 47.0
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 5.8e-105 385.6 509 45.4
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 7.5e-105 385.2 507 46.2
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 1.3e-104 384.4 508 44.1
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 3.7e-104 382.9 510 44.7
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 1.4e-103 380.9 506 44.1
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 7.1e-103 378.6 511 44.8
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 9.2e-103 378.3 502 44.8
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 3.5e-102 376.3 516 45.0
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.6e-102 375.9 505 42.8
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 6.0e-102 375.6 605 39.2
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.8e-102 375.2 475 46.3
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.7e-101 374.0 502 41.2
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.1e-101 372.5 505 44.0
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 2.5e-100 370.2 506 44.3
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 3.3e-100 369.8 511 44.0
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 7.3e-100 368.6 505 44.0
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 7.3e-100 368.6 509 42.6
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 1.2e-99 367.9 502 43.8
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.7e-99 365.9 516 41.9
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 5.2e-98 362.5 467 45.6
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 2.6e-97 360.1 510 43.5
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 4.1e-95 352.8 516 42.4
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 1.2e-94 351.3 519 41.2
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 3.0e-93 346.7 502 41.0
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 2.5e-92 343.6 483 42.4
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 5.6e-92 342.4 501 42.7
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 7.3e-92 342.0 508 41.3
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.2e-91 341.3 504 40.5
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 4.7e-91 339.3 460 45.0
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 1.4e-90 337.8 508 41.7
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 2.4e-90 337.0 506 41.1
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 3.1e-90 336.7 518 40.0
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 5.2e-90 335.9 499 39.7
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 1.5e-89 334.3 514 40.3
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 2.0e-89 334.0 501 40.5
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 3.4e-89 333.2 509 41.3
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 5.8e-89 332.4 516 40.9
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 5.8e-89 332.4 510 41.2
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 1.4e-87 327.8 510 40.4
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.4e-87 327.0 358 49.7
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 5.4e-87 325.9 473 40.8
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 1.2e-86 324.7 408 43.1
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.0e-85 321.6 405 45.4
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 3.0e-85 320.1 517 38.7
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 6.6e-85 318.9 511 37.0
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 6.6e-85 318.9 507 40.0
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 1.5e-84 317.8 510 40.2
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.3e-83 314.7 464 42.0
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 3.6e-83 313.2 509 39.9
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 4.5e-81 306.2 441 43.3
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 2.2e-80 303.9 502 38.4
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 2.9e-80 303.5 406 45.1
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 1.5e-76 291.2 307 48.9
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 4.3e-76 289.7 523 36.5
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 1.1e-74 285.0 441 42.4
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 4.5e-73 279.6 400 41.8
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 8.4e-72 275.4 673 31.2
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 2.1e-70 270.8 880 27.3
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.5e-68 264.6 366 42.3
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 3.3e-68 263.5 362 42.8
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 6.2e-67 259.2 501 36.3
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 7.1e-63 245.7 329 44.7
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 1.2e-57 228.4 464 34.1
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 7.6e-57 225.7 273 47.6
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 4.8e-51 206.5 306 43.5
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 5.3e-50 203.0 134 76.9
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 2.6e-49 200.7 539 28.8
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 2.1e-46 191.0 267 40.8
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 3.3e-44 183.7 505 29.5
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.7e-43 181.4 334 37.4
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 4.8e-43 179.9 446 29.4
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.7e-32 144.8 148 52.0
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 2.9e-32 144.1 282 36.9
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 4.2e-31 140.2 278 35.6
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.2e-30 138.7 255 35.7
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 8.8e-29 132.5 158 44.3
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 4.4e-28 130.2 263 35.7
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.1e-26 125.6 114 50.9
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 7.0e-26 122.9 134 50.0
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 2.9e-24 117.5 207 38.2
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 1.5e-23 115.2 466 26.8
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 4.2e-23 113.6 579 23.5
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 4.2e-23 113.6 250 32.8
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 9.4e-23 112.5 96 50.0
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 3.0e-21 107.5 130 44.6
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 2.5e-15 87.8 169 35.5
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 3.6e-14 84.0 139 41.7
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 9.8e-12 75.9 254 30.3
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 1.2e-09 68.9 135 32.6
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 1.6e-09 68.6 90 45.6
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 2.7e-09 67.8 124 34.7
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 2.9e-08 64.3 136 33.1
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 2.9e-08 64.3 136 33.1
Atru.chr1.2967 Acer truncatum HOM05D005725 ORTHO05D007531 1.2e-06 58.9 87 44.8
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 4.7e-06 57.0 74 39.2
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 6.1e-06 56.6 114 35.1
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 6.1e-06 56.6 114 35.1
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 6.1e-06 56.6 114 35.1


User provided reference genes

Program Settings