Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 6.9e-199 697.2 377 100.0
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.6e-177 625.5 347 98.8
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.0e-145 519.6 350 83.7
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 2.9e-120 436.0 333 72.4
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 3.8e-120 435.6 445 62.7
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.7e-117 426.8 375 66.7
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 2.1e-102 376.7 357 58.5
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.6e-100 368.6 354 59.3
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 9.6e-100 367.9 352 59.9
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.6e-99 367.1 355 59.7
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 2.8e-99 366.3 354 59.0
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.8e-99 366.3 354 59.0
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.8e-99 365.5 358 59.8
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 6.2e-99 365.2 353 58.1
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-98 364.4 354 58.8
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.3e-98 362.1 354 58.5
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.0e-97 360.1 360 58.9
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 5.8e-97 358.6 352 56.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.0e-96 357.8 370 57.6
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.0e-96 357.8 352 58.5
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 2.2e-96 356.7 359 59.1
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 2.2e-96 356.7 354 57.6
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.9e-96 356.3 366 59.6
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 8.4e-96 354.8 356 58.4
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.4e-95 354.0 347 57.6
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.9e-95 353.6 355 60.6
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 2.5e-95 353.2 352 57.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 3.2e-95 352.8 352 59.4
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 3.2e-95 352.8 350 60.0
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 4.2e-95 352.4 359 56.5
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.6e-94 350.5 351 59.5
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.1e-94 350.1 373 55.8
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.1e-94 350.1 361 54.6
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 6.0e-94 348.6 359 59.1
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.3e-93 346.7 351 59.3
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 3.0e-93 346.3 352 57.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.7e-93 345.1 355 59.2
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.5e-92 344.0 363 55.6
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.5e-92 344.0 356 57.9
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.5e-92 344.0 367 56.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.5e-92 344.0 355 55.5
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.9e-92 343.6 388 52.8
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 3.3e-92 342.8 366 59.6
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 3.3e-92 342.8 368 57.3
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 3.3e-92 342.8 371 60.1
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 9.6e-92 341.3 358 55.6
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 9.6e-92 341.3 349 61.0
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.3e-91 340.9 359 57.4
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.6e-91 340.5 366 59.3
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.6e-91 340.5 362 55.2
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 2.8e-91 339.7 365 55.6
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 6.3e-91 338.6 363 55.9
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 8.2e-91 338.2 362 55.0
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.4e-90 337.4 356 57.6
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.4e-90 337.4 356 56.5
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.4e-90 337.4 370 59.7
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 4.1e-90 335.9 362 55.5
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 6.9e-90 335.1 369 54.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 6.9e-90 335.1 357 56.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 3.4e-89 332.8 356 54.8
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 4.5e-89 332.4 358 61.5
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 4.5e-89 332.4 356 54.5
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 4.5e-89 332.4 371 58.5
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.5e-89 332.4 368 59.0
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 5.9e-89 332.0 381 54.6
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 7.6e-89 331.6 352 60.5
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.0e-88 331.3 361 55.7
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.0e-88 331.3 369 59.3
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-88 330.9 353 62.3
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.7e-88 330.5 361 57.1
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.7e-88 330.5 353 55.2
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-88 330.5 361 55.4
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.7e-88 330.5 363 54.0
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 2.9e-88 329.7 361 57.9
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 3.8e-88 329.3 371 53.4
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 6.5e-88 328.6 359 56.0
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 6.5e-88 328.6 360 56.1
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.4e-87 327.4 385 53.8
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.9e-87 327.0 365 58.1
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.5e-87 326.6 359 54.9
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.1e-86 323.6 375 53.9
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.6e-86 322.8 358 53.6
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.6e-86 322.4 359 54.3
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 6.1e-86 322.0 374 57.5
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 6.1e-86 322.0 350 58.3
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.3e-85 320.9 349 55.6
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 8.7e-85 318.2 363 52.6
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 6.3e-83 312.0 351 56.4
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 8.2e-83 311.6 359 53.2
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 8.2e-83 311.6 357 59.1
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.4e-82 310.8 360 52.8
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.4e-82 310.8 356 55.1
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 2.4e-82 310.1 357 60.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.3e-82 308.9 364 57.4
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 2.0e-81 307.0 422 46.0
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.6e-81 306.6 354 54.5
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.7e-81 305.1 368 54.6
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.3e-80 304.3 353 53.5
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 1.9e-79 300.4 357 60.2
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.5e-79 300.1 353 53.0
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 3.2e-79 299.7 352 60.5
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 3.2e-79 299.7 352 60.5
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 4.2e-79 299.3 355 55.5
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 4.2e-79 299.3 352 59.9
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.2e-79 299.3 350 51.1
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 4.6e-78 295.8 364 52.7
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 4.6e-78 295.8 362 51.4
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 6.1e-78 295.4 357 59.7
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 8.8e-77 291.6 360 52.2
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.1e-76 291.2 360 50.8
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 3.3e-76 289.7 361 50.7
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 9.1e-74 281.6 354 49.7
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 9.1e-74 281.6 354 49.7
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.6e-73 280.0 355 49.0
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 2.2e-72 276.9 364 48.4
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.9e-71 273.9 349 51.0
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.1e-70 270.4 359 49.3
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.8e-69 267.3 383 49.9
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 8.8e-69 265.0 308 53.6
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 9.1e-66 255.0 389 48.1
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 5.9e-65 252.3 286 54.5
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 3.6e-62 243.0 285 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 6.1e-62 242.3 374 47.3
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.0e-61 240.0 309 48.5
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 4.0e-61 239.6 291 52.6
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 3.7e-59 233.0 384 49.2
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.1e-58 228.4 169 69.2
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.1e-54 217.2 295 49.2
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 6.1e-54 215.7 463 38.9
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 6.1e-46 189.1 364 40.4
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.0e-45 188.3 168 58.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.3e-45 187.2 98 87.8
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.4e-44 183.0 99 86.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.4e-44 183.0 99 86.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 2.4e-42 177.2 149 62.4
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 7.0e-42 175.6 93 89.2
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.5e-39 167.2 229 46.3
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 3.3e-39 166.8 315 45.1
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 8.0e-38 162.2 276 45.3
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.9e-35 152.9 285 43.9
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.9e-35 152.9 285 43.9
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 8.6e-32 142.1 673 25.9
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.3e-31 139.8 163 55.2
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 3.5e-25 120.2 71 76.1
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 6.0e-25 119.4 127 47.2
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.3e-24 118.2 111 52.3
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 8.6e-24 115.5 154 50.0
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 9.5e-23 112.1 186 45.2
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 9.5e-23 112.1 157 45.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.8e-22 110.5 65 81.5
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.9e-21 105.5 67 79.1
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.6e-20 104.0 221 44.8
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.9e-18 97.8 355 29.6
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 4.3e-15 86.7 117 46.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 7.3e-15 85.9 75 56.0
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 1.1e-07 62.0 36 80.6
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 7.3e-07 59.3 74 45.9


User provided reference genes

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