Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 7.0e-220 766.9 373 100.0
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 1.2e-195 686.4 373 90.9
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 3.8e-149 531.9 370 72.2
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 5.2e-122 441.8 354 63.6
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 2.8e-107 392.9 386 55.2
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 2.6e-105 386.3 381 56.2
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 1.9e-100 370.2 382 52.9
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 4.7e-99 365.5 389 51.4
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 1.8e-98 363.6 388 51.8
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 1.2e-97 360.9 371 50.7
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 1.5e-97 360.5 387 53.0
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 2.0e-97 360.1 381 50.4
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 3.4e-97 359.4 386 51.3
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 2.9e-96 356.3 385 51.7
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 3.7e-96 355.9 387 49.1
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 6.4e-96 355.1 381 49.9
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 1.1e-95 354.4 389 49.4
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 1.9e-95 353.6 387 49.9
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 3.2e-95 352.8 385 49.9
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 7.1e-95 351.7 405 49.1
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 9.2e-95 351.3 385 49.9
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 1.5e-92 344.0 381 50.7
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 1.9e-92 343.6 380 50.3
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 5.6e-92 342.0 378 49.5
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.6e-91 340.5 384 50.0
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 2.1e-91 340.1 384 48.4
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 2.8e-91 339.7 382 49.2
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 6.2e-91 338.6 382 48.4
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 8.1e-91 338.2 379 50.4
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 1.8e-90 337.0 386 47.9
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 1.8e-90 337.0 388 46.9
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 2.4e-90 336.7 379 50.1
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 3.1e-90 336.3 384 49.5
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 4.0e-90 335.9 382 50.3
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.2e-89 334.3 385 47.8
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 3.4e-89 332.8 383 49.1
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 4.4e-89 332.4 378 49.2
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 9.9e-89 331.3 382 48.2
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 1.3e-88 330.9 383 46.2
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 4.9e-88 328.9 391 47.6
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 6.4e-88 328.6 385 48.6
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.4e-87 327.4 384 49.0
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 1.9e-87 327.0 385 48.8
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 3.2e-87 326.2 373 50.1
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.1e-86 323.6 386 47.2
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 7.8e-86 321.6 389 45.5
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.0e-85 321.2 372 48.4
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 1.7e-85 320.5 378 48.7
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.7e-85 320.5 385 48.6
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 2.3e-85 320.1 386 47.4
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 9.6e-84 314.7 383 45.7
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.6e-83 313.9 387 47.0
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 1.6e-83 313.9 389 48.6
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 2.1e-83 313.5 357 48.7
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 2.8e-83 313.2 375 46.9
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 1.2e-81 307.8 363 47.7
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 1.2e-81 307.8 384 46.6
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 1.5e-81 307.4 369 47.4
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 2.0e-81 307.0 362 45.9
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 2.0e-81 307.0 383 47.8
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 3.4e-81 306.2 373 46.1
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 4.4e-81 305.8 385 43.6
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 7.6e-81 305.1 369 47.7
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 2.2e-80 303.5 397 44.6
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 2.2e-80 303.5 380 46.3
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 3.8e-80 302.8 362 47.0
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 3.8e-80 302.8 356 47.5
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 1.9e-79 300.4 384 44.8
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 9.3e-79 298.1 385 42.6
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.2e-78 297.7 379 47.0
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 3.5e-78 296.2 372 41.9
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 3.5e-78 296.2 418 41.1
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.9e-77 292.7 382 45.0
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 6.6e-77 292.0 372 44.9
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 1.5e-76 290.8 372 44.9
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 2.5e-76 290.0 367 43.1
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 5.6e-76 288.9 382 45.0
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 2.8e-75 286.6 382 41.9
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 3.6e-75 286.2 367 42.5
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 6.2e-75 285.4 383 45.4
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 6.2e-75 285.4 337 47.2
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 3.1e-74 283.1 371 44.5
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 1.2e-73 281.2 384 42.7
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 3.4e-73 279.6 391 41.7
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 1.3e-72 277.7 386 43.0
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 6.4e-72 275.4 380 42.9
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 8.4e-72 275.0 380 45.0
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.9e-71 273.9 384 42.7
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 2.4e-71 273.5 386 43.5
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 3.2e-71 273.1 377 43.5
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 1.6e-70 270.8 384 43.8
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 3.5e-70 269.6 378 42.3
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 1.0e-69 268.1 375 45.1
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 2.3e-69 266.9 327 47.7
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 3.3e-68 263.1 372 41.9
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 3.3e-68 263.1 380 39.5
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 5.6e-68 262.3 378 42.3
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 9.6e-68 261.5 403 38.2
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 1.4e-66 257.7 382 40.8
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.4e-65 253.1 343 42.9
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 3.8e-64 249.6 378 42.3
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 3.8e-64 249.6 365 41.1
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 9.3e-63 245.0 408 37.7
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 5.1e-61 239.2 361 41.3
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 2.4e-58 230.3 286 48.6
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 4.5e-57 226.1 275 46.5
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 2.2e-56 223.8 302 45.7
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 2.2e-56 223.8 422 35.5
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 3.0e-53 213.4 266 48.5
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 3.3e-52 209.9 420 34.0
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 4.8e-51 206.1 364 35.7
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 1.5e-49 201.1 252 45.6
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-48 196.8 165 59.4
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.4e-42 177.9 181 52.5
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 4.5e-41 172.9 286 39.5
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 5.7e-36 156.0 455 27.9
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 9.4e-31 138.7 147 45.6
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 8.5e-24 115.5 88 58.0
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.8e-21 107.8 87 50.6
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 3.0e-21 107.1 428 25.7
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 5.2e-13 79.7 72 56.9
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 5.7e-12 76.3 118 33.9
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 2.4e-10 70.9 344 25.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 9.1e-10 68.9 348 25.3
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 1.2e-09 68.6 347 24.2
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 2.7e-09 67.4 93 41.9
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.7e-09 67.4 370 24.9
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 3.5e-09 67.0 72 52.8
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 5.9e-09 66.2 356 25.0
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 5.9e-09 66.2 342 25.1
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 7.7e-09 65.9 385 26.5
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 1.0e-08 65.5 354 25.4
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 1.3e-08 65.1 52 50.0
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.7e-08 64.7 360 26.1
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 6.6e-08 62.8 340 23.2
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 6.6e-08 62.8 352 23.9
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 6.6e-08 62.8 344 24.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.1e-07 62.0 344 25.6
Oeu028521.1 Olea europaea HOM05D006130 ORTHO05D007491 1.5e-07 61.6 31 80.6
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 1.9e-07 61.2 106 32.1
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 2.5e-07 60.8 95 34.7
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 4.2e-07 60.1 97 34.0
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 5.5e-07 59.7 362 22.1
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 7.2e-07 59.3 344 23.0
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 9.5e-07 58.9 344 23.5
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 1.2e-06 58.5 359 23.4
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.6e-06 58.2 357 23.0
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 2.1e-06 57.8 338 23.1
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 2.8e-06 57.4 355 23.4
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 8.0e-06 55.8 345 24.6


User provided reference genes

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