Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 6.6e-126 454.1 243 100.0
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.6e-119 431.4 233 97.9
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.0e-102 377.1 243 81.9
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.0e-99 365.2 243 79.8
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.4e-98 362.1 243 79.8
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.9e-97 359.0 225 84.9
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.9e-97 359.0 243 78.6
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 4.9e-97 358.2 243 79.0
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-96 357.1 243 78.6
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 4.2e-96 355.1 243 77.4
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 5.4e-96 354.8 243 77.4
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.6e-95 351.7 243 77.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.0e-95 351.3 244 77.5
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.3e-94 350.1 243 75.7
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 3.0e-94 349.0 243 77.0
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 6.6e-94 347.8 245 77.6
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 6.6e-94 347.8 243 77.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 8.7e-94 347.4 244 75.8
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 8.7e-94 347.4 242 77.3
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.9e-93 346.3 243 76.1
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.9e-93 346.3 244 76.6
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.5e-93 345.9 243 76.1
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.3e-93 345.5 243 77.0
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 3.3e-93 345.5 243 74.9
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 7.3e-93 344.4 244 76.6
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.6e-92 343.2 243 75.3
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 2.1e-92 342.8 243 75.7
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 3.6e-92 342.0 243 75.3
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 3.6e-92 342.0 243 74.9
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 3.6e-92 342.0 244 75.4
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 8.1e-92 340.9 243 76.1
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.1e-91 340.5 243 74.9
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.1e-91 340.5 243 75.3
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.1e-91 340.5 243 76.1
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.1e-91 340.5 243 76.1
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.1e-91 340.5 243 74.5
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 3.1e-91 339.0 244 75.8
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 3.1e-91 339.0 243 74.5
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 4.0e-91 338.6 243 75.3
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 2.0e-90 336.3 239 74.9
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.4e-90 335.5 243 74.5
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 4.5e-90 335.1 243 74.9
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 7.6e-90 334.3 244 74.2
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 7.6e-90 334.3 284 67.3
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 9.9e-90 334.0 244 74.2
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 9.9e-90 334.0 243 74.5
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 3.8e-89 332.0 243 73.3
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.1e-88 330.5 243 72.8
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.4e-88 330.1 243 73.7
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.9e-88 329.7 222 78.8
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.9e-88 329.7 243 73.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.4e-88 329.3 243 72.8
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 5.4e-88 328.2 243 73.3
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 9.3e-88 327.4 241 74.3
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 1.2e-87 327.0 241 73.9
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.6e-87 326.6 243 71.2
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.7e-87 325.9 243 72.0
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 4.6e-87 325.1 240 72.5
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 7.9e-87 324.3 245 71.4
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.0e-86 323.9 243 71.2
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.0e-86 323.9 244 71.7
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.3e-86 322.8 226 75.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 5.1e-86 321.6 196 86.7
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 5.1e-86 321.6 244 70.9
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.1e-85 320.5 243 73.7
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.9e-85 319.7 244 70.1
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 3.3e-85 318.9 244 69.7
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 4.3e-85 318.5 244 69.7
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.4e-85 317.8 222 76.6
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 6.2e-84 314.7 244 70.5
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.8e-83 313.2 272 64.3
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 3.1e-83 312.4 243 69.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.0e-82 309.7 222 74.3
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.6e-82 309.3 243 68.7
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.4e-82 308.9 197 83.2
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 4.5e-82 308.5 243 67.1
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 4.5e-82 308.5 243 67.1
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.3e-81 307.0 283 64.0
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.3e-81 307.0 243 69.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.7e-81 306.6 243 67.9
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 2.2e-81 306.2 246 68.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 2.9e-81 305.8 243 67.5
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 2.9e-81 305.8 244 67.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.9e-81 305.8 243 67.9
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 4.9e-81 305.1 243 66.7
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 4.9e-81 305.1 243 66.7
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 6.4e-81 304.7 243 67.1
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 8.4e-81 304.3 243 66.7
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.1e-80 303.9 243 66.7
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 3.2e-80 302.4 196 81.1
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 4.2e-80 302.0 243 66.3
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 4.2e-80 302.0 243 66.7
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 7.1e-80 301.2 243 66.3
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.2e-79 300.4 196 81.1
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 2.1e-79 299.7 243 66.3
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 2.1e-79 299.7 243 66.3
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.1e-79 299.7 196 79.1
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 2.7e-79 299.3 243 65.8
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 4.6e-79 298.5 243 65.4
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 4.6e-79 298.5 243 67.9
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 6.0e-79 298.1 246 69.1
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 7.9e-79 297.7 244 66.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.3e-78 297.0 199 79.4
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.3e-78 296.2 249 65.5
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.3e-78 296.2 199 78.9
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 3.0e-78 295.8 244 65.2
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.9e-78 295.4 199 78.9
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.1e-78 295.0 199 78.9
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 6.7e-78 294.7 246 65.0
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 6.7e-78 294.7 244 63.5
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 8.7e-78 294.3 196 78.1
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-77 293.9 230 67.4
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 2.5e-77 292.7 246 65.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.3e-77 292.4 239 66.9
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 4.3e-77 292.0 292 57.9
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 7.4e-77 291.2 244 66.0
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.3e-76 290.4 196 79.1
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.6e-76 290.0 317 53.6
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 3.7e-76 288.9 280 59.3
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 3.7e-76 288.9 244 61.9
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 6.2e-76 288.1 244 65.2
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 8.2e-76 287.7 244 65.2
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.8e-75 286.6 287 57.5
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.4e-74 282.3 259 62.9
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.2e-73 279.6 259 62.9
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 6.5e-73 278.1 222 70.3
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 8.4e-73 277.7 237 64.6
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.1e-69 267.3 196 69.9
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.9e-67 258.1 181 74.0
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 2.9e-65 252.7 244 60.7
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.6e-63 246.9 175 73.7
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 4.1e-59 232.3 188 64.4
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.6e-55 219.2 196 63.8
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.0e-53 213.4 212 55.7
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.3e-53 212.6 135 78.5
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 1.5e-48 197.2 155 68.4
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 8.8e-46 188.0 155 62.6
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.3e-36 157.5 149 59.1
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.2e-36 156.8 132 62.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 4.8e-36 155.6 112 71.4
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.7e-34 149.8 171 52.6
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 5.0e-33 145.6 198 41.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.2e-32 142.9 236 45.3
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 4.4e-29 132.5 237 41.4
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 9.8e-29 131.3 205 37.1
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.4e-27 126.7 236 41.1
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 7.0e-27 125.2 208 36.5
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 6.8e-22 108.6 100 61.0
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 1.1e-19 101.3 178 33.1
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.7e-18 96.7 78 62.8
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 3.5e-18 96.3 192 31.8
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.6e-16 89.0 179 39.1
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 3.6e-15 86.3 63 71.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 5.8e-13 79.0 85 54.1
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.9e-12 76.6 42 90.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.9e-09 66.2 64 57.8


User provided reference genes

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