Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 4.3e-111 404.8 226 100.0
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 6.4e-107 391.0 226 95.6
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 9.3e-74 280.8 228 75.4
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 4.3e-63 245.4 229 69.0
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 7.4e-63 244.6 206 72.3
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 2.8e-62 242.7 165 73.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.4e-61 239.6 215 61.9
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.2e-60 237.3 130 84.6
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.2e-60 237.3 133 84.2
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 2.0e-60 236.5 185 66.5
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.6e-60 236.1 134 83.6
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 2.6e-60 236.1 134 82.8
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 3.4e-60 235.7 134 83.6
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 4.5e-60 235.3 134 82.8
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 7.6e-60 234.6 203 60.6
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 1.7e-59 233.4 208 61.5
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 1.7e-59 233.4 134 82.8
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.7e-59 233.4 134 81.3
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 2.2e-59 233.0 228 57.9
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.9e-59 232.6 219 59.4
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.8e-59 232.3 134 83.6
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 3.8e-59 232.3 174 67.2
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 3.8e-59 232.3 130 83.1
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 4.9e-59 231.9 134 82.1
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.1e-58 230.7 197 63.5
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.9e-58 229.9 130 81.5
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 4.2e-58 228.8 134 80.6
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 4.2e-58 228.8 225 58.2
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 4.2e-58 228.8 189 64.6
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 4.2e-58 228.8 189 64.6
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 5.5e-58 228.4 134 81.3
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 5.5e-58 228.4 222 58.6
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 7.1e-58 228.0 184 64.7
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 9.3e-58 227.6 134 82.1
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.6e-57 226.9 184 64.1
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 1.6e-57 226.9 199 63.3
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 2.1e-57 226.5 130 83.1
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 2.7e-57 226.1 177 68.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 2.7e-57 226.1 126 83.3
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.0e-57 224.9 203 61.6
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 6.0e-57 224.9 216 56.0
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 6.0e-57 224.9 134 78.4
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 6.0e-57 224.9 134 78.4
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 7.9e-57 224.6 134 79.9
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.3e-56 223.8 134 79.1
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 2.3e-56 223.0 187 65.8
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.3e-56 223.0 126 83.3
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.0e-56 222.6 206 59.2
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 3.0e-56 222.6 229 58.1
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 3.9e-56 222.2 231 55.4
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 3.9e-56 222.2 134 80.6
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 8.7e-56 221.1 189 63.0
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 8.7e-56 221.1 191 63.4
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.1e-55 220.7 205 61.0
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.1e-55 220.7 205 61.0
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.1e-55 220.7 202 57.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-55 220.3 205 61.0
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.5e-55 220.3 126 81.7
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.5e-55 219.5 199 60.8
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 3.3e-55 219.2 134 76.9
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 3.3e-55 219.2 126 81.7
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 4.3e-55 218.8 130 79.2
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.3e-55 218.8 182 63.7
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.3e-55 218.8 182 63.7
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 4.3e-55 218.8 134 77.6
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 5.7e-55 218.4 213 56.3
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.7e-55 218.4 130 77.7
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 9.6e-55 217.6 130 78.5
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.3e-54 217.2 127 80.3
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 2.1e-54 216.5 218 56.0
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.8e-54 216.1 226 55.8
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 3.7e-54 215.7 182 63.2
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 4.8e-54 215.3 207 57.0
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 6.3e-54 214.9 134 76.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 6.3e-54 214.9 206 58.7
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 6.3e-54 214.9 134 76.1
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 8.2e-54 214.5 220 54.5
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 8.2e-54 214.5 183 63.9
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.1e-53 214.2 231 54.1
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.1e-53 214.2 187 59.4
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.4e-53 213.8 195 61.0
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.8e-53 213.4 214 56.5
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 3.1e-53 212.6 134 75.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 3.1e-53 212.6 224 53.6
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 4.1e-53 212.2 194 59.8
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 5.3e-53 211.8 130 75.4
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 5.3e-53 211.8 130 75.4
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 6.9e-53 211.5 197 57.4
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 6.9e-53 211.5 197 57.4
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 6.9e-53 211.5 206 56.8
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.2e-52 210.7 204 57.4
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 2.0e-52 209.9 194 58.8
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 2.6e-52 209.5 134 73.1
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 2.6e-52 209.5 134 73.1
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.4e-52 209.1 230 55.2
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.7e-51 206.8 192 58.3
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-51 206.8 200 57.5
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.2e-51 206.5 214 53.3
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.8e-51 205.7 193 60.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 5.0e-51 205.3 191 57.6
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 5.0e-51 205.3 134 76.1
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 5.0e-51 205.3 118 83.1
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 5.0e-51 205.3 126 73.8
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 8.4e-51 204.5 199 56.8
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.1e-50 204.1 126 74.6
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 1.4e-50 203.8 202 57.9
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.4e-50 203.8 202 57.9
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 1.4e-50 203.8 202 57.9
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.5e-50 203.0 225 60.0
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 3.2e-50 202.6 193 58.0
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 5.5e-50 201.8 198 58.1
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 9.3e-50 201.1 126 75.4
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 9.7e-47 191.0 134 72.4
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 5.9e-44 181.8 126 67.5
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 8.5e-43 177.9 124 66.1
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.4e-42 177.2 172 55.8
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.2e-41 174.1 124 66.1
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.1e-39 167.5 124 63.7
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.3e-39 165.6 124 62.9
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.3e-39 165.6 124 62.9
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 9.1e-29 131.3 169 49.1
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.2e-28 131.0 71 87.3
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.6e-28 130.6 118 59.3
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 7.7e-28 128.3 70 87.1
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 8.5e-27 124.8 128 59.4
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.0e-23 113.6 128 46.9
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 1.2e-20 104.4 120 44.2
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.6e-20 104.0 61 77.0
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.6e-20 104.0 140 39.3
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 2.2e-19 100.1 64 68.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 4.0e-16 89.4 49 83.7
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 9.8e-15 84.7 56 67.9
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 8.3e-14 81.6 83 54.2
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.0e-11 72.4 97 42.3
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 5.5e-10 68.9 46 65.2
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-08 64.7 33 84.8
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.5e-07 60.8 41 70.7
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 9.8e-07 58.2 74 45.9
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.8e-06 56.6 128 39.1


User provided reference genes

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