Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.8e-64 247.7 170 100.0
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.9e-30 136.3 101 89.1
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.3e-27 126.7 147 74.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.6e-23 113.2 171 45.0
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 6.4e-22 108.6 74 70.3
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 8.3e-22 108.2 86 60.5
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.4e-21 107.5 157 45.2
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 3.2e-21 106.3 134 62.7
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.1e-20 103.6 145 59.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.6e-20 102.4 143 43.4
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 4.6e-20 102.4 94 59.6
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.3e-19 100.9 151 47.7
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.3e-19 100.1 76 61.8
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 3.0e-19 99.8 144 54.2
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.9e-19 99.4 89 57.3
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.5e-18 97.4 159 41.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.9e-18 97.1 161 41.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.5e-18 96.7 157 50.3
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.3e-18 96.3 161 47.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.6e-18 95.5 143 55.9
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 5.6e-18 95.5 165 41.2
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.3e-18 95.1 73 63.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 9.6e-18 94.7 134 41.0
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 9.6e-18 94.7 146 41.1
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.7e-17 92.4 164 48.8
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 4.7e-17 92.4 89 57.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 4.7e-17 92.4 89 57.3
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 6.2e-17 92.0 91 56.0
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.1e-16 91.3 163 49.1
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.8e-16 90.5 85 60.0
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.8e-16 90.5 69 66.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.4e-16 90.1 135 54.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 2.4e-16 90.1 135 44.4
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.1e-16 89.7 138 42.0
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 4.0e-16 89.4 94 52.1
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 5.2e-16 89.0 73 61.6
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.8e-16 88.6 156 48.1
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.9e-16 88.2 71 63.4
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.2e-15 87.8 70 64.3
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.2e-15 87.8 71 63.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.5e-15 87.4 73 60.3
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.0e-15 87.0 73 60.3
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 3.4e-15 86.3 95 53.7
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.4e-15 86.3 90 54.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 5.8e-15 85.5 96 53.1
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.8e-15 85.5 69 65.2
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 7.6e-15 85.1 96 53.1
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 7.6e-15 85.1 93 53.8
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 7.6e-15 85.1 96 53.1
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 7.6e-15 85.1 93 53.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 7.6e-15 85.1 96 53.1
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 7.6e-15 85.1 93 53.8
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 7.6e-15 85.1 93 53.8
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 7.6e-15 85.1 176 51.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 9.9e-15 84.7 79 54.4
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.3e-14 84.3 70 62.9
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.3e-14 84.3 149 38.3
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-14 84.3 155 38.1
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.3e-14 84.3 72 59.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.3e-14 84.3 102 51.0
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.7e-14 84.0 78 61.5
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-14 84.0 96 53.1
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-14 83.6 93 53.8
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.2e-14 83.6 129 41.1
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.8e-14 82.8 153 42.5
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.4e-14 81.6 72 65.3
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 8.4e-14 81.6 73 54.8
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.1e-13 81.3 69 62.3
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-13 81.3 100 46.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.1e-13 81.3 85 51.8
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.4e-13 80.9 75 56.0
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.9e-13 80.5 85 55.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.2e-13 79.7 103 46.6
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 3.2e-13 79.7 91 52.7
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.2e-13 79.7 91 51.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.2e-13 79.7 78 56.4
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.4e-13 79.0 72 55.6
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 5.4e-13 79.0 75 57.3
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 5.4e-13 79.0 142 37.3
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 5.4e-13 79.0 92 54.3
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 7.1e-13 78.6 78 53.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 7.1e-13 78.6 72 58.3
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 7.1e-13 78.6 145 37.9
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 9.3e-13 78.2 87 55.2
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 9.3e-13 78.2 87 55.2
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 9.3e-13 78.2 69 62.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 9.3e-13 78.2 69 62.3
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 9.3e-13 78.2 74 52.7
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.6e-12 77.4 87 52.9
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.6e-12 77.4 72 58.3
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 1.6e-12 77.4 83 54.2
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.6e-12 77.4 70 58.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.1e-12 77.0 96 49.0
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.1e-12 77.0 139 41.0
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.7e-12 76.6 87 52.9
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.7e-12 76.6 74 60.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.7e-12 76.6 139 43.2
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.7e-12 76.6 73 54.8
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.7e-12 76.6 83 56.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.7e-12 76.6 89 51.7
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.5e-12 76.3 87 51.7
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.5e-12 76.3 87 51.7
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.5e-12 76.3 84 54.8
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 3.5e-12 76.3 72 55.6
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 4.6e-12 75.9 72 55.6
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 4.6e-12 75.9 73 57.5
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 4.6e-12 75.9 73 57.5
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.6e-12 75.9 69 60.9
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.0e-12 75.5 72 55.6
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.0e-12 75.5 80 52.5
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 7.8e-12 75.1 90 52.2
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 7.8e-12 75.1 81 50.6
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 7.8e-12 75.1 69 59.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 7.8e-12 75.1 69 58.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.0e-11 74.7 72 54.2
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.3e-11 74.3 139 37.4
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.3e-11 74.3 87 50.6
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.3e-11 74.3 76 56.6
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-11 73.9 72 56.9
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-11 73.9 72 56.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-11 73.9 72 56.9
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.7e-11 73.9 69 56.5
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.3e-11 73.6 91 49.5
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.3e-11 73.6 76 52.6
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 3.9e-11 72.8 70 54.3
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.9e-11 72.8 91 52.7
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.1e-11 72.4 67 58.2
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 5.1e-11 72.4 77 51.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 6.6e-11 72.0 75 56.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.6e-11 72.0 71 53.5
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 6.6e-11 72.0 100 45.0
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 8.7e-11 71.6 72 50.0
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.5e-10 70.9 100 47.0
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-10 70.5 72 58.3
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.5e-10 70.1 73 50.7
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 2.5e-10 70.1 72 51.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.5e-10 70.1 84 46.4
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 4.3e-10 69.3 66 57.6
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 7.3e-10 68.6 78 52.6
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 7.3e-10 68.6 82 48.8
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 9.6e-10 68.2 74 50.0
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 9.6e-10 68.2 141 43.3
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 9.6e-10 68.2 100 43.0
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.3e-09 67.8 91 47.3
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.3e-09 67.8 91 47.3
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-09 67.8 89 49.4
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.3e-09 67.8 71 49.3
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.6e-09 67.4 94 45.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 2.1e-09 67.0 78 50.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.8e-09 66.6 68 54.4
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 2.8e-09 66.6 89 48.3
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.8e-09 66.6 71 47.9
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 3.6e-09 66.2 90 48.9
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 6.2e-09 65.5 71 46.5
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 6.2e-09 65.5 71 46.5
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 6.2e-09 65.5 91 45.1
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.1e-09 65.1 71 49.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.4e-08 64.3 78 51.3
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.8e-08 63.9 52 61.5
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.8e-08 63.9 88 45.5
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.8e-08 63.9 79 48.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.1e-08 63.2 73 50.7
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 3.1e-08 63.2 76 50.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.1e-08 63.2 85 49.4
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 5.3e-08 62.4 75 52.0
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.2e-07 61.2 73 49.3
Pp3c22_17930 Physcomitrium patens HOM05D030757 ORTHO05D004171 1.5e-07 60.8 95 37.9
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 2.0e-07 60.5 57 50.9
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 3.4e-07 59.7 101 41.6
FAN07G0344 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.4e-07 59.7 68 48.5
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 3.4e-07 59.7 86 45.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 3.4e-07 59.7 76 46.1
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 7.6e-07 58.5 70 45.7
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.7e-06 57.4 67 50.7
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 4.9e-06 55.8 105 41.0


User provided reference genes

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