Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.8e-46 189.9 190 100.0
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-18 97.4 134 50.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.7e-18 96.3 118 72.9
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.7e-18 96.3 118 72.9
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 3.6e-18 95.9 129 62.0
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.4e-17 94.0 126 66.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.0e-16 90.1 143 56.6
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.5e-16 89.7 126 63.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.7e-16 88.6 143 40.6
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 7.4e-16 88.2 134 49.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.8e-15 86.3 151 39.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.7e-15 85.9 71 59.2
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 4.8e-15 85.5 133 47.4
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 6.3e-15 85.1 126 53.2
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 4.1e-14 82.4 76 57.9
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 4.1e-14 82.4 129 41.1
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 6.9e-14 81.6 147 52.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.6e-13 79.7 144 62.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.5e-13 79.0 72 56.9
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.9e-13 78.6 147 40.8
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.9e-13 78.6 135 51.9
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.9e-13 78.6 80 51.2
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 7.7e-13 78.2 123 48.8
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 7.7e-13 78.2 129 53.5
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 7.7e-13 78.2 70 57.1
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 7.7e-13 78.2 72 56.9
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 7.7e-13 78.2 75 56.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.0e-12 77.8 80 53.8
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.0e-12 77.8 126 38.9
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.0e-12 77.8 80 53.8
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.0e-12 77.8 122 50.8
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.3e-12 77.4 138 39.1
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.7e-12 77.0 112 42.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.7e-12 77.0 138 44.2
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.7e-12 77.0 119 41.2
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.2e-12 76.6 100 46.0
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.2e-12 76.6 66 60.6
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.2e-12 76.6 83 49.4
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.9e-12 76.3 130 60.8
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 3.8e-12 75.9 132 64.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.0e-12 75.5 148 47.3
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 5.0e-12 75.5 68 57.4
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 6.5e-12 75.1 126 38.1
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 8.5e-12 74.7 114 56.1
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.1e-11 74.3 71 56.3
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.4e-11 73.9 128 61.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-11 73.9 127 48.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.4e-11 73.9 135 46.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.4e-11 73.9 126 37.3
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.4e-11 73.9 128 39.8
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.9e-11 73.6 83 55.4
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.9e-11 73.6 121 48.8
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.9e-11 73.6 118 39.8
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 2.5e-11 73.2 118 55.1
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.5e-11 73.2 122 42.6
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.5e-11 73.2 80 51.2
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.2e-11 72.8 123 43.9
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.2e-11 72.8 79 51.9
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 3.2e-11 72.8 78 51.3
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.2e-11 72.4 137 43.8
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.2e-11 72.4 126 36.5
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.2e-11 72.4 82 50.0
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.5e-11 72.0 130 36.2
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 7.2e-11 71.6 126 46.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 7.2e-11 71.6 130 36.9
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 7.2e-11 71.6 130 36.9
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 9.4e-11 71.2 71 53.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-11 71.2 137 45.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-11 71.2 123 47.2
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-11 71.2 137 36.5
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-11 71.2 137 39.4
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 9.4e-11 71.2 123 47.2
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 9.4e-11 71.2 137 39.4
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 9.4e-11 71.2 123 47.2
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 9.4e-11 71.2 137 39.4
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 9.4e-11 71.2 137 40.1
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 9.4e-11 71.2 72 51.4
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 9.4e-11 71.2 72 51.4
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-10 70.5 88 47.7
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.6e-10 70.5 81 48.1
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.6e-10 70.5 125 47.2
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-10 70.1 123 43.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 2.1e-10 70.1 86 48.8
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 2.1e-10 70.1 86 48.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.7e-10 69.7 78 50.0
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 2.7e-10 69.7 82 47.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.7e-10 69.7 78 51.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.6e-10 69.3 70 51.4
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 4.7e-10 68.9 73 50.7
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.7e-10 68.9 75 52.0
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.7e-10 68.9 127 48.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 4.7e-10 68.9 73 52.1
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 4.7e-10 68.9 73 50.7
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 4.7e-10 68.9 77 51.9
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.7e-10 68.9 88 45.5
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 4.7e-10 68.9 82 48.8
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 6.1e-10 68.6 137 39.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 6.1e-10 68.6 81 46.9
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 7.9e-10 68.2 69 50.7
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 7.9e-10 68.2 135 53.3
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-09 67.8 80 47.5
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.0e-09 67.8 71 52.1
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-09 67.4 116 56.9
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.4e-09 67.4 87 49.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 1.8e-09 67.0 129 50.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.3e-09 66.6 71 52.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 2.3e-09 66.6 89 43.8
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 2.3e-09 66.6 84 47.6
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.0e-09 66.2 87 49.4
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.0e-09 66.2 134 35.8
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 3.0e-09 66.2 73 49.3
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.9e-09 65.9 78 48.7
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 5.1e-09 65.5 83 48.2
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 6.7e-09 65.1 72 51.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 6.7e-09 65.1 92 45.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 6.7e-09 65.1 72 51.4
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.5e-08 63.9 84 48.8
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.5e-08 63.9 84 46.4
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.5e-08 63.9 81 46.9
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.5e-08 63.9 84 47.6
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.0e-08 63.5 88 44.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 2.0e-08 63.5 77 46.8
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.0e-08 63.5 71 49.3
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 3.3e-08 62.8 91 45.1
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-08 62.8 91 45.1
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 3.3e-08 62.8 91 45.1
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 3.3e-08 62.8 68 52.9
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.4e-08 62.4 80 46.2
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.4e-08 62.4 92 46.7
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.4e-08 62.4 69 50.7
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.4e-08 61.6 84 44.0
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 7.4e-08 61.6 76 46.1
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 7.4e-08 61.6 67 52.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 9.7e-08 61.2 80 42.5
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.7e-08 61.2 71 49.3
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-07 60.8 74 45.9
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.7e-07 60.5 81 43.2
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 2.2e-07 60.1 72 45.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.2e-07 60.1 71 49.3
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 2.8e-07 59.7 106 54.7
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 3.7e-07 59.3 79 44.3
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 3.7e-07 59.3 82 43.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 4.8e-07 58.9 86 44.2
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 4.8e-07 58.9 79 48.1
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.8e-07 58.9 70 47.1
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.3e-07 58.5 69 47.8
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 8.2e-07 58.2 136 43.4
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 8.2e-07 58.2 81 43.2
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.4e-06 57.4 89 43.8
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.8e-06 57.0 71 46.5
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.8e-06 57.0 79 43.0
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.4e-06 56.6 123 50.4
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 3.1e-06 56.2 68 50.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 4.1e-06 55.8 72 45.8
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.1e-06 55.8 62 50.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.3e-06 55.5 79 48.1
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 9.1e-06 54.7 69 43.5


User provided reference genes

Program Settings