Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 7.0e-135 484.6 374 100.0
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 9.6e-76 288.1 380 75.0
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 5.3e-74 282.3 380 62.9
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 6.0e-70 268.9 374 62.6
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 6.2e-67 258.8 374 70.9
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.3e-64 251.1 374 69.5
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.2e-63 246.1 374 67.4
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 3.0e-61 240.0 370 68.1
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.6e-57 226.9 367 66.2
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 6.5e-56 222.2 255 80.8
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-54 218.0 368 66.0
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 4.6e-54 216.1 278 58.3
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 3.0e-53 213.4 247 88.7
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 2.0e-52 210.7 251 86.1
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.5e-52 210.3 279 85.3
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 5.7e-52 209.1 247 89.1
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 7.4e-52 208.8 243 87.7
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.7e-51 207.6 369 64.0
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.8e-51 206.8 361 65.4
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.2e-51 205.3 363 65.8
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-50 204.9 250 86.8
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.1e-50 204.9 241 88.8
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-50 204.9 250 86.8
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.8e-50 204.1 250 75.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.1e-50 203.4 239 87.4
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.1e-50 203.4 250 86.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 4.1e-50 203.0 244 89.8
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.3e-50 202.6 246 87.8
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 9.1e-50 201.8 242 90.1
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-49 201.4 238 91.2
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.2e-49 201.4 238 89.9
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.5e-49 201.1 250 86.8
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-49 201.1 238 90.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.0e-49 200.7 237 88.6
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 2.6e-49 200.3 252 87.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.6e-49 200.3 242 89.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 3.4e-49 199.9 239 90.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 3.4e-49 199.9 244 88.5
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.4e-49 199.9 246 87.8
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 3.4e-49 199.9 251 85.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 4.5e-49 199.5 262 70.6
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.5e-49 199.5 247 87.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.5e-49 199.5 247 87.9
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 4.5e-49 199.5 369 64.5
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 4.5e-49 199.5 249 86.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 4.5e-49 199.5 252 84.9
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 5.9e-49 199.1 257 71.6
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.9e-49 199.1 243 88.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.7e-49 198.7 247 84.6
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.0e-48 198.4 251 85.7
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.0e-48 198.4 247 85.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.0e-48 198.4 245 87.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 1.0e-48 198.4 243 88.5
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.3e-48 198.0 250 86.0
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.3e-48 198.0 242 87.2
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.7e-48 197.6 243 88.1
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.7e-48 197.6 247 84.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.7e-48 197.6 246 87.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.7e-48 197.6 246 87.8
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.7e-48 197.6 246 86.2
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.9e-48 196.8 237 89.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 2.9e-48 196.8 243 88.5
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.9e-48 196.8 220 94.1
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.8e-48 196.4 243 87.7
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 3.8e-48 196.4 243 88.5
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.8e-48 196.4 243 87.7
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 5.0e-48 196.1 287 62.0
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.0e-48 196.1 241 88.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.5e-48 195.7 243 87.7
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 6.5e-48 195.7 251 86.1
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.5e-48 195.7 250 82.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.5e-48 195.3 245 85.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.5e-48 195.3 246 84.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 8.5e-48 195.3 239 86.2
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.1e-47 194.9 243 88.1
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.4e-47 194.5 243 87.7
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.4e-47 194.5 251 85.3
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.4e-47 194.5 238 86.1
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.9e-47 194.1 243 88.1
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.9e-47 194.1 243 88.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.9e-47 194.1 362 63.8
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.9e-47 194.1 250 84.0
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.9e-47 194.1 244 87.3
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.9e-47 194.1 248 86.3
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.5e-47 193.7 251 85.3
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.5e-47 193.7 242 88.0
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 3.2e-47 193.4 241 87.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.2e-47 193.4 242 87.6
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 3.2e-47 193.4 243 84.4
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.2e-47 193.0 244 87.7
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.5e-47 192.6 241 87.6
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.5e-47 192.6 245 85.7
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 5.5e-47 192.6 241 87.1
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 7.2e-47 192.2 246 87.4
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 9.4e-47 191.8 247 86.6
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.2e-46 191.4 230 90.0
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.1e-46 190.7 246 87.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.1e-46 190.7 241 87.1
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.1e-46 190.7 247 84.6
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 2.1e-46 190.7 245 84.9
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.7e-46 190.3 235 88.9
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.7e-46 190.3 249 86.7
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 2.7e-46 190.3 251 84.9
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 3.6e-46 189.9 241 87.1
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.6e-46 189.9 241 87.1
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 3.6e-46 189.9 242 86.8
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.6e-46 189.9 241 87.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.6e-46 189.9 241 86.7
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.7e-46 189.5 363 65.0
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 6.1e-46 189.1 250 84.4
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.0e-45 188.3 243 84.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-45 188.0 241 86.7
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.0e-45 186.8 243 70.4
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 3.0e-45 186.8 245 84.1
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 5.1e-45 186.0 256 82.0
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-44 184.5 243 68.7
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.5e-44 184.5 242 85.1
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.0e-44 184.1 242 82.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.3e-44 183.3 220 92.7
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.4e-44 183.0 245 81.6
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.4e-44 183.0 245 81.6
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.3e-43 181.4 109 79.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 2.2e-43 180.6 241 85.9
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.7e-43 179.9 243 84.0
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 3.7e-43 179.9 242 83.9
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.7e-43 179.9 261 81.6
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.7e-43 179.9 261 81.6
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.8e-42 177.6 103 82.5
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.3e-42 176.0 235 84.7
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.3e-42 176.0 250 67.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 5.9e-41 172.6 106 79.2
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 7.7e-41 172.2 110 76.4
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.2e-40 170.6 101 82.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.2e-40 170.6 101 82.2
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 5.0e-40 169.5 93 83.9
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.0e-40 169.5 245 84.5
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 8.5e-40 168.7 92 84.8
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 8.5e-40 168.7 244 83.6
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.4e-39 167.9 244 83.6
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.9e-39 167.5 96 83.3
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.9e-39 167.5 87 89.7
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.2e-39 166.4 245 80.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.2e-39 166.4 245 80.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.2e-38 164.9 96 82.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.2e-38 164.9 87 86.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.6e-38 164.5 245 80.8
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.1e-38 164.1 246 80.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.6e-38 163.3 246 80.9
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.7e-38 162.9 89 85.4
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.7e-38 162.9 96 83.3
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.1e-38 162.5 242 81.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 8.0e-38 162.2 100 80.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.3e-37 160.6 234 83.3
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 5.2e-37 159.5 81 92.6
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.6e-36 157.1 234 82.5
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 4.1e-34 149.8 245 76.7
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 2.9e-32 143.7 247 77.7
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 5.5e-31 139.4 227 81.1
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 6.1e-30 136.0 92 66.3
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.4e-26 124.0 321 57.0
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.7e-25 120.6 76 77.6
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.2e-23 113.2 73 75.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.6e-22 111.3 81 66.7
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 2.3e-21 107.5 243 75.3
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.8e-19 100.5 163 47.2
Oeu027875.1 Olea europaea HOM05D003751 ORTHO05D004765 4.8e-19 99.8 55 81.8
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 8.3e-19 99.0 79 59.5
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 5.9e-17 92.8 89 51.7
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 2.9e-16 90.5 50 78.0
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.1e-14 84.3 179 86.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.1e-14 84.3 75 56.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.1e-14 82.8 41 95.1
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 2.3e-13 80.9 65 83.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 8.9e-13 79.0 41 92.7
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.4e-12 77.0 39 84.6
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 7.5e-12 75.9 41 87.8
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.2e-11 74.3 49 77.6
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.8e-11 73.9 42 88.1
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 1.8e-10 71.2 48 70.8
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.4e-10 70.9 42 85.7
SEGI_29790 Sequoiadendron giganteum HOM05D000106 ORTHO05D008911 4.7e-06 56.6 90 38.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 6.1e-06 56.2 47 61.7


User provided reference genes

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