Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 0.0e+00 1206.8 614 100.0
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 0.0e+00 1134.8 618 94.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.2e-277 959.5 620 78.5
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 7.5e-243 844.0 616 69.8
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.5e-238 827.8 609 68.1
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.6e-237 826.2 610 67.7
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.0e-236 822.0 614 66.6
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.6e-232 809.7 622 66.1
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 6.6e-231 804.3 619 64.6
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.1e-230 803.5 617 66.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.2e-230 800.8 620 67.3
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.7e-229 798.1 616 65.1
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 6.1e-229 797.7 624 64.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.8e-228 796.2 617 65.8
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.2e-227 793.5 617 66.5
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 7.5e-227 790.8 632 64.2
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 9.8e-227 790.4 617 65.3
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.7e-226 789.6 632 64.2
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 2.2e-226 789.3 616 64.1
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.9e-226 788.1 619 64.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 6.3e-226 787.7 617 64.5
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.1e-225 786.9 620 66.5
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.4e-225 786.6 623 63.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 5.4e-225 784.6 633 63.5
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.7e-224 782.3 614 64.3
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.9e-223 778.9 620 64.4
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 6.6e-223 777.7 620 64.4
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 8.6e-223 777.3 618 62.1
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.5e-222 776.5 614 64.5
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.3e-222 775.0 617 64.2
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.6e-221 773.1 618 64.1
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 4.7e-221 771.5 617 64.5
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.4e-220 770.0 619 64.5
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.9e-220 767.3 621 63.9
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 2.0e-219 766.1 611 64.0
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 2.0e-219 766.1 619 64.0
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.0e-219 766.1 614 64.0
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.4e-217 759.2 569 67.5
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 7.0e-217 757.7 625 63.8
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.2e-216 756.9 618 63.3
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.6e-216 756.5 623 64.0
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 4.6e-216 755.0 618 62.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.3e-215 752.7 616 62.2
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.3e-215 752.7 616 63.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 3.9e-215 751.9 569 67.0
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 5.0e-215 751.5 617 63.7
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 6.6e-215 751.1 625 62.4
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 7.3e-214 747.7 623 62.6
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.2e-213 746.9 623 61.8
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.6e-213 746.5 616 62.5
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 4.7e-213 745.0 616 62.5
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 6.2e-213 744.6 618 61.2
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 8.0e-213 744.2 618 63.3
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.3e-210 736.9 618 61.7
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 2.9e-210 735.7 618 61.0
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.4e-209 732.6 623 62.3
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.2e-209 732.3 619 60.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 5.4e-209 731.5 600 61.8
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 7.0e-209 731.1 624 61.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 3.5e-208 728.8 618 61.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 6.0e-208 728.0 619 61.2
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.0e-207 727.2 628 59.7
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.1e-207 724.9 630 61.7
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 6.6e-207 724.5 612 60.6
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.5e-206 722.6 627 61.6
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 7.3e-206 721.1 614 60.4
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 2.8e-205 719.2 616 61.4
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 8.1e-205 717.6 616 61.2
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 6.8e-204 714.5 621 59.9
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 8.9e-204 714.1 612 60.6
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.2e-203 713.8 616 59.7
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.0e-203 713.0 621 59.7
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 5.8e-203 711.4 627 59.5
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.3e-202 710.3 602 59.5
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.9e-202 709.1 634 58.8
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 3.7e-202 708.8 602 59.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 6.4e-202 708.0 600 60.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 8.3e-202 707.6 609 59.9
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 5.4e-201 704.9 666 55.9
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 7.8e-200 701.0 637 57.8
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 5.2e-196 688.3 729 52.5
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 2.0e-195 686.4 617 57.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 3.4e-195 685.6 598 60.4
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.8e-195 684.9 630 58.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.8e-194 682.2 627 57.6
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.4e-194 681.0 637 58.2
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.4e-193 680.2 655 55.6
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 5.4e-193 678.3 625 58.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.7e-192 676.0 615 58.0
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.3e-191 672.9 615 57.7
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 8.1e-189 664.5 643 55.7
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.2e-185 652.5 664 54.1
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.6e-184 648.7 681 52.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 6.0e-184 648.3 614 55.4
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.6e-181 640.2 736 49.5
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 6.0e-176 621.7 512 62.7
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.5e-174 616.3 641 52.7
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.2e-169 599.4 611 54.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.3e-167 593.2 621 51.0
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 6.7e-167 591.7 622 52.7
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.2e-163 580.9 614 51.8
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 3.8e-162 575.9 599 51.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.5e-161 573.2 606 50.7
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.0e-159 567.8 606 50.0
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.2e-152 544.3 653 50.2
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.2e-152 544.3 512 57.0
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.1e-148 529.6 447 63.5
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.1e-132 476.5 432 56.9
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-121 441.0 413 58.4
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.0e-116 422.2 412 56.8
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 5.0e-114 416.0 326 62.9
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.5e-113 414.5 337 60.8
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-111 407.1 400 57.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.4e-110 402.9 446 50.4
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.3e-109 398.7 412 54.9
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-107 394.4 410 54.1
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.3e-105 386.3 413 53.5
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.5e-105 385.2 416 52.6
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 3.1e-103 380.2 382 52.6
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-95 353.6 403 50.9
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 8.3e-93 345.5 252 72.2
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.6e-91 339.7 415 48.9
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.8e-87 327.8 586 35.0
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.8e-87 327.8 209 76.1
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.2e-86 325.1 560 35.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.6e-73 278.9 511 36.6
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 8.4e-69 265.8 534 31.6
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.6e-67 260.0 523 32.1
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 8.7e-58 229.2 168 67.3
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 4.0e-55 220.3 524 28.8
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.9e-53 213.4 419 34.4
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-51 208.4 210 52.9
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.3e-50 204.5 237 50.6
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.2e-48 196.4 237 49.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 2.3e-42 177.9 109 80.7
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.4e-36 158.7 104 71.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.0e-34 151.0 113 65.5
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.7e-32 144.1 98 70.4
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 4.7e-27 127.1 109 60.6
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.5e-25 122.1 98 59.2
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.3e-23 113.6 77 72.7
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.0e-21 109.4 96 56.2
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 2.1e-19 101.7 86 57.0
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.6e-19 100.9 93 53.8
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 8.0e-19 99.8 208 35.1
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 2.2e-16 91.7 164 39.0
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 8.2e-16 89.7 89 44.9
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.8e-15 88.6 69 62.3
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.8e-15 88.6 69 62.3
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.8e-13 80.9 71 54.9
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 5.0e-13 80.5 69 58.0
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 44 75.0
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 44 75.0
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 4.4e-09 67.4 96 41.7
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 2.8e-08 64.7 227 27.8
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 6.3e-08 63.5 222 25.2
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 6.3e-08 63.5 229 24.9
Lj4g0001854 Lotus japonicus HOM05D000300 ORTHO05D008589 3.1e-07 61.2 229 25.3
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 4.1e-07 60.8 230 24.3
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 4.1e-07 60.8 227 26.0
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.1e-07 60.8 52 51.9
Medtr8g069570 Medicago truncatula HOM05D000300 ORTHO05D008589 5.4e-07 60.5 227 25.1
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 5.4e-07 60.5 222 24.8
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 7.0e-07 60.1 181 23.8
VMungo0251G3375 Vigna mungo HOM05D000300 ORTHO05D008589 7.0e-07 60.1 225 28.4
Potri.018G079600 Populus trichocarpa HOM05D000300 ORTHO05D008589 1.2e-06 59.3 222 25.2
Potri.005G212400 Populus trichocarpa HOM05D003028 ORTHO05D003465 1.6e-06 58.9 143 25.2
Sabra18G0067300 Salix brachista HOM05D000300 ORTHO05D008589 1.6e-06 58.9 222 25.7
arahy.Tifrunner.gnm1.ann1.42J6NL Arachis hypogaea HOM05D000300 ORTHO05D008589 2.0e-06 58.5 221 26.7
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.0e-06 58.5 160 28.1
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.0e-06 58.5 160 28.1
Peaxi162Scf00025g00002 Petunia axillaris HOM05D003028 ORTHO05D003465 2.0e-06 58.5 143 25.2
Phvul.003G063200 Phaseolus vulgaris HOM05D000300 ORTHO05D008589 2.0e-06 58.5 217 26.3
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 2.7e-06 58.2 160 28.1
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 2.7e-06 58.2 187 23.5
Duzib248G0087 Durio zibethinus HOM05D000300 ORTHO05D008589 5.9e-06 57.0 229 23.6
Sc04g0009400 Simmondsia chinensis HOM05D000300 ORTHO05D008589 5.9e-06 57.0 229 23.6
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 5.9e-06 57.0 171 24.6
Actinidia15078 Actinidia chinensis HOM05D000300 ORTHO05D008589 7.7e-06 56.6 222 24.8
CAN.G143.57 Capsicum annuum HOM05D000300 ORTHO05D008589 7.7e-06 56.6 225 25.3


User provided reference genes

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