Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 5.9e-294 1013.4 511 100.0
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.8e-242 842.4 509 81.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 3.5e-238 828.2 485 84.5
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 7.1e-231 803.9 510 75.7
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.0e-221 771.9 506 73.3
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 5.3e-218 761.1 506 73.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.9e-215 752.7 484 74.4
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 2.5e-215 752.3 506 71.7
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 3.2e-215 751.9 503 73.4
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 7.2e-215 750.7 506 71.3
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.7e-214 748.8 503 72.8
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.1e-214 747.7 506 70.9
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.0e-213 746.9 506 70.6
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 2.3e-213 745.7 505 72.9
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.9e-213 745.0 506 71.3
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 6.7e-213 744.2 484 73.6
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.4e-212 740.7 506 70.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 9.7e-212 740.3 506 69.6
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 9.7e-212 740.3 506 70.6
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.6e-211 739.6 506 69.6
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 2.8e-211 738.8 511 68.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 6.3e-211 737.6 509 70.1
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 6.3e-211 737.6 487 70.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.2e-211 737.3 506 69.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.1e-210 736.9 511 68.7
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 2.0e-209 732.6 480 72.7
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 5.9e-209 731.1 475 73.5
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 5.9e-209 731.1 506 68.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 2.9e-208 728.8 509 68.8
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 3.8e-208 728.4 506 68.6
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 6.5e-208 727.6 507 69.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 6.5e-208 727.6 511 69.3
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.1e-207 726.9 506 68.6
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.4e-207 726.5 484 71.1
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.2e-206 723.4 487 71.3
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.2e-206 723.4 506 68.2
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 4.6e-206 721.5 506 67.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 6.1e-206 721.1 507 69.2
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.4e-205 719.9 504 69.2
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 8.8e-205 717.2 476 71.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.1e-204 716.8 473 70.8
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.1e-204 716.8 484 69.8
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 4.4e-204 714.9 509 67.0
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 7.4e-204 714.1 506 67.2
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.8e-203 712.2 506 67.8
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.7e-203 711.8 511 67.7
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.1e-202 710.3 506 67.6
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.8e-202 709.5 506 67.4
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 4.1e-202 708.4 465 71.6
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 5.3e-202 708.0 506 67.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 9.1e-202 707.2 515 66.6
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 3.4e-201 705.3 485 70.1
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 3.8e-200 701.8 490 69.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.0e-200 701.4 487 68.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-199 700.3 487 68.4
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.4e-199 699.9 487 68.4
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 9.4e-199 697.2 488 67.6
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 6.1e-198 694.5 506 66.2
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 6.1e-198 694.5 506 65.8
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.0e-197 693.7 488 67.6
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.3e-197 692.6 484 68.0
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.5e-196 689.9 506 67.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.7e-196 688.0 509 65.2
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 7.4e-196 687.6 509 65.0
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 3.7e-195 685.3 494 66.8
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 4.8e-195 684.9 509 65.4
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 6.3e-195 684.5 506 65.4
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.3e-195 684.5 482 66.2
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 8.2e-195 684.1 480 66.9
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 8.2e-195 684.1 485 67.2
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 8.2e-195 684.1 505 64.6
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.1e-194 683.7 508 66.5
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.8e-194 682.9 476 66.4
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.1e-194 681.8 480 66.7
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.3e-194 681.4 480 66.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 5.3e-194 681.4 503 64.0
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.7e-192 676.4 503 63.0
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.9e-192 675.6 480 66.0
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.9e-192 675.6 506 65.2
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 5.0e-192 674.9 439 72.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 5.0e-192 674.9 485 66.2
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-191 672.9 478 68.6
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.5e-191 671.4 506 65.4
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 9.4e-191 670.6 465 66.5
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 2.7e-190 669.1 483 64.2
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 2.7e-190 669.1 483 64.2
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 2.7e-190 669.1 483 64.2
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.6e-190 668.7 476 65.3
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.6e-190 668.7 439 72.4
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.0e-189 667.2 439 71.5
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.3e-189 666.0 509 64.8
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.2e-188 663.7 439 71.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.3e-187 660.2 480 64.8
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.6e-185 653.3 476 66.6
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 7.7e-185 651.0 466 65.5
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.9e-184 649.0 345 95.4
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 5.0e-184 648.3 470 66.0
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.5e-183 646.0 477 64.4
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 2.3e-181 639.4 442 70.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.0e-180 636.3 465 64.7
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.5e-180 634.4 473 66.0
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.2e-177 627.1 505 62.8
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.7e-177 625.9 403 73.2
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.3e-176 623.6 455 64.4
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 3.8e-176 622.1 482 61.2
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 5.0e-176 621.7 467 65.5
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.1e-170 604.0 466 62.2
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 3.5e-169 599.0 418 68.4
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.8e-169 597.8 385 73.2
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.6e-166 590.1 489 60.1
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.3e-159 565.5 480 60.8
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 8.9e-157 557.8 476 57.8
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 5.4e-154 548.5 439 61.5
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.5e-151 540.4 476 58.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.9e-151 540.0 492 56.3
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 3.2e-146 522.7 463 55.9
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-134 484.2 315 74.9
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.3e-131 474.2 325 70.2
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 7.1e-130 468.4 486 49.4
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.2e-129 467.6 347 65.7
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 5.4e-122 442.2 466 49.4
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 9.0e-117 424.9 295 67.5
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 5.5e-114 415.6 297 68.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 5.5e-114 415.6 380 56.8
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 7.1e-114 415.2 297 67.7
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 3.8e-99 366.3 249 68.3
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.7e-91 340.9 533 40.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 7.2e-90 335.5 607 36.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.4e-80 304.7 459 41.6
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.4e-80 304.7 454 41.2
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.1e-65 254.2 157 73.2
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.8e-54 217.2 213 50.2
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 1.3e-51 208.4 240 48.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-40 172.2 175 52.6
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.0e-40 170.2 309 36.9
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.0e-35 153.3 108 75.0
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.5e-34 151.8 76 96.1
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 7.5e-31 139.4 118 56.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 8.3e-30 136.0 237 37.1
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.2e-28 132.1 99 64.6
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.0e-23 114.8 87 59.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 5.1e-19 100.1 68 77.9
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 8.7e-19 99.4 68 60.3
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.6e-15 87.8 89 47.2


User provided reference genes

Program Settings