Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.0e-169 597.4 304 100.0
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.5e-132 476.5 331 76.1
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 9.4e-130 467.2 306 79.7
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.4e-117 426.0 305 73.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.7e-115 419.9 279 76.3
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.5e-115 417.9 257 85.2
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 5.2e-112 408.3 304 69.4
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.4e-111 405.2 303 68.0
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 9.8e-111 404.1 307 67.1
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.3e-110 403.7 309 67.3
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.7e-110 403.3 300 70.7
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.8e-110 402.5 304 68.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 3.1e-109 399.1 304 68.1
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 5.4e-109 398.3 292 70.2
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 7.0e-109 397.9 301 67.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 7.0e-109 397.9 304 67.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.0e-108 396.4 312 66.3
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 4.5e-108 395.2 310 65.5
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.0e-107 394.0 295 69.2
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.3e-107 393.7 300 68.7
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.7e-107 393.3 265 74.3
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.7e-107 393.3 290 69.7
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.9e-107 392.5 304 66.1
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.0e-107 391.7 305 65.6
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 6.6e-107 391.3 296 68.6
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 8.6e-107 391.0 310 65.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.9e-106 389.8 272 72.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.5e-106 389.4 295 68.5
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 3.3e-106 389.0 299 66.9
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 4.2e-106 388.7 297 67.3
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 5.5e-106 388.3 291 69.1
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 5.5e-106 388.3 310 66.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 7.2e-106 387.9 304 67.8
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 9.5e-106 387.5 305 65.9
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 4.7e-105 385.2 303 67.3
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 6.1e-105 384.8 301 66.4
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 8.0e-105 384.4 309 66.7
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.0e-104 384.0 293 67.9
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.4e-104 383.6 309 65.4
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.0e-104 382.1 295 69.5
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 5.2e-104 381.7 309 65.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 6.8e-104 381.3 296 66.6
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-103 380.6 296 66.6
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.2e-103 380.6 294 67.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.2e-103 380.6 289 68.9
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.2e-103 380.6 305 66.2
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.5e-103 380.2 301 65.4
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.0e-103 379.8 310 64.8
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.6e-103 379.4 308 65.9
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 7.5e-103 377.9 291 67.0
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 9.8e-103 377.5 296 66.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.2e-102 376.3 291 67.0
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 2.8e-102 375.9 295 68.5
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.8e-102 375.9 288 67.7
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.9e-102 375.2 302 64.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 8.3e-102 374.4 298 66.4
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 8.3e-102 374.4 264 69.7
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.4e-101 373.6 291 66.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.4e-101 373.6 299 65.9
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.8e-101 373.2 297 65.7
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.4e-101 372.9 309 64.7
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 3.2e-101 372.5 288 66.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 5.4e-101 371.7 259 73.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 7.0e-101 371.3 266 71.1
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 9.2e-101 370.9 304 64.1
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.2e-100 370.5 295 64.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.6e-100 370.2 301 63.8
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 5.9e-100 368.2 301 63.5
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.3e-99 367.1 287 67.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.9e-99 365.9 307 62.9
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.9e-99 365.5 270 68.1
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 7.3e-98 361.3 325 60.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.8e-97 359.4 271 66.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.8e-97 359.4 242 73.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 4.7e-97 358.6 317 60.3
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.0e-96 357.5 298 61.7
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.5e-95 353.6 300 63.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 7.5e-95 351.3 309 62.1
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.3e-94 350.5 304 62.8
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.3e-94 350.5 256 70.7
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 4.9e-94 348.6 274 66.8
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.0e-92 343.2 242 71.1
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 4.6e-92 342.0 278 63.7
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.7e-91 340.1 311 59.8
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 5.0e-91 338.6 305 60.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 4.7e-89 332.0 260 64.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.3e-88 329.7 242 69.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 8.9e-88 327.8 291 60.1
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 2.6e-87 326.2 263 62.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.4e-87 325.5 273 61.9
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.2e-84 317.4 242 69.8
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 4.6e-84 315.5 296 58.4
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.3e-83 313.2 329 54.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 4.7e-81 305.4 292 59.2
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.4e-80 303.9 303 56.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.2e-79 300.8 217 71.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.0e-79 300.1 215 70.7
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 9.9e-79 297.7 298 55.7
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.4e-77 293.9 233 66.1
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 5.4e-77 292.0 210 71.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 6.0e-76 288.5 216 67.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 9.6e-74 281.2 370 46.5
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 9.6e-74 281.2 195 71.3
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.1e-72 276.2 191 70.7
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.4e-70 268.1 181 75.7
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 7.8e-68 261.5 244 61.1
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.0e-67 261.2 268 51.5
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.5e-58 230.7 258 48.4
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 7.3e-58 228.4 262 45.0
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 4.5e-55 219.2 252 46.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 3.5e-52 209.5 218 53.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-51 207.6 362 39.5
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.0e-48 194.9 168 57.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 2.1e-44 183.7 257 45.1
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.7e-42 175.6 135 67.4
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 6.7e-35 152.1 146 59.6
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.2e-33 147.1 119 65.5
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 5.3e-32 142.5 146 56.2
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.0e-31 140.6 110 64.5
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-28 131.3 146 52.7
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 3.9e-27 126.3 134 53.7
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 3.1e-24 116.7 73 82.2
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-22 110.5 87 56.3
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.2e-20 104.8 188 38.3
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-20 104.4 79 68.4
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 3.6e-20 103.2 296 30.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.4e-19 101.3 74 66.2
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 2.8e-17 93.6 217 36.9
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 2.4e-16 90.5 217 35.5
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.6e-15 87.0 59 69.5
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.5e-15 86.3 50 82.0
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 7.7e-15 85.5 103 48.5
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-14 84.0 75 62.7
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.1e-13 81.6 110 42.7
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.2e-12 78.2 89 49.4
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 2.3e-11 73.9 94 46.8
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.0e-11 73.6 220 29.1
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 6.7e-11 72.4 70 55.7
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.1e-10 71.6 76 50.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-10 71.6 61 50.8
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-10 71.2 74 52.7
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-10 71.2 74 52.7
EL10Ac1g01937 Beta vulgaris HOM05D005250 ORTHO05D006342 2.2e-09 67.4 59 59.3
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.3e-08 62.8 68 51.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 5.3e-08 62.8 49 65.3
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 3.5e-07 60.1 218 25.2
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 7.7e-07 58.9 224 23.2
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.0e-06 58.5 212 23.6
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.0e-06 58.5 214 24.8
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 2.2e-06 57.4 228 21.9
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 2.2e-06 57.4 43 62.8
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 3.8e-06 56.6 189 20.6
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 5.0e-06 56.2 188 25.0
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 6.5e-06 55.8 201 21.4
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 6.5e-06 55.8 235 22.6
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 6.5e-06 55.8 187 23.5


User provided reference genes

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