Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.6e-174 614.4 295 100.0
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.1e-165 584.3 295 94.9
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.9e-143 512.7 317 77.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 5.5e-135 484.6 334 72.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.2e-134 483.4 316 73.7
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 4.5e-129 464.9 315 69.2
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 2.2e-128 462.6 315 68.9
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 2.5e-127 459.1 315 67.6
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 4.2e-127 458.4 390 60.5
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 2.1e-126 456.1 315 67.9
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.6e-126 455.3 316 67.4
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 8.0e-126 454.1 316 67.7
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.0e-125 452.2 314 66.9
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 5.2e-125 451.4 316 67.1
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.6e-124 449.1 315 66.0
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.6e-124 449.1 316 67.4
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 4.4e-124 448.4 316 67.4
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 7.5e-124 447.6 315 65.1
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.8e-124 447.2 319 66.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.3e-123 446.8 316 66.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 2.2e-123 446.0 320 66.6
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.8e-123 445.7 297 69.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 3.7e-123 445.3 315 65.7
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.3e-123 444.5 319 65.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.4e-122 443.4 314 65.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.4e-122 442.6 316 65.5
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 3.1e-122 442.2 317 65.6
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 5.4e-122 441.4 315 65.4
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 7.0e-122 441.0 312 66.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 9.1e-122 440.7 320 65.6
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-121 440.3 293 70.3
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.2e-121 440.3 315 65.1
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.6e-121 439.9 315 65.1
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.0e-121 439.5 315 64.4
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.0e-121 439.5 317 66.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.5e-121 438.7 315 65.7
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 4.5e-121 438.3 367 58.3
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.5e-121 438.3 314 64.0
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 7.7e-121 437.6 316 65.2
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.0e-120 437.2 315 65.4
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.3e-120 436.8 313 64.5
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.3e-120 436.0 314 64.6
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.9e-120 435.6 314 64.0
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.9e-120 435.6 315 63.8
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.8e-120 435.3 314 64.6
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.0e-120 434.9 314 64.6
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 6.6e-120 434.5 318 65.1
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.6e-120 434.5 316 65.5
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 6.6e-120 434.5 318 64.5
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 8.6e-120 434.1 314 64.0
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.5e-119 433.3 318 65.7
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-119 432.6 318 66.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 3.3e-119 432.2 316 64.6
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 3.3e-119 432.2 316 65.2
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.2e-119 431.8 318 64.2
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 7.2e-119 431.0 315 65.4
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 9.5e-119 430.6 314 64.6
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 9.5e-119 430.6 316 64.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.2e-118 430.3 321 62.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.2e-118 430.3 320 63.8
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.1e-118 429.5 313 66.1
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.1e-118 429.5 316 63.9
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.1e-118 429.5 317 65.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.8e-118 429.1 331 60.7
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.8e-118 429.1 321 63.2
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 4.7e-118 428.3 323 63.8
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 4.7e-118 428.3 315 62.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 4.7e-118 428.3 322 63.0
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.1e-118 427.9 295 68.8
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 8.0e-118 427.6 315 62.2
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.4e-117 426.8 317 65.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.0e-117 425.6 316 62.7
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.0e-117 425.6 303 66.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 3.0e-117 425.6 369 56.9
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.0e-117 425.6 317 63.1
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 4.0e-117 425.2 337 60.5
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 6.8e-117 424.5 315 63.2
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.2e-116 423.7 317 62.8
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.5e-116 423.3 315 62.9
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.0e-116 422.9 315 62.5
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.6e-116 422.5 315 63.2
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.6e-116 422.5 315 62.9
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 3.4e-116 422.2 317 63.7
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 3.4e-116 422.2 316 62.0
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.4e-116 421.8 315 62.9
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.4e-116 421.8 315 62.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.4e-116 421.8 315 62.9
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.4e-116 421.8 314 62.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 5.7e-116 421.4 315 61.6
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.8e-116 420.6 311 62.7
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-115 420.2 315 62.2
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.7e-115 419.9 317 61.8
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.8e-115 419.1 316 62.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 8.3e-115 417.5 314 62.7
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.1e-114 417.2 311 62.1
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.4e-114 416.8 315 61.9
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.8e-114 416.4 315 61.3
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.8e-114 416.4 317 61.5
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 4.1e-114 415.2 317 61.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 4.1e-114 415.2 317 61.5
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.1e-114 415.2 303 63.7
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 4.1e-114 415.2 317 62.8
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 7.0e-114 414.5 316 62.3
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 7.0e-114 414.5 315 61.6
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.6e-113 413.3 315 61.6
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.7e-113 412.5 320 61.6
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 5.9e-113 411.4 315 62.5
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-112 410.6 317 60.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-112 410.2 317 61.2
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 6.6e-112 407.9 314 62.7
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-111 407.1 315 60.6
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.5e-111 406.8 315 60.6
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-111 406.0 306 62.4
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 2.1e-110 402.9 315 59.7
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.6e-110 402.1 314 60.2
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 4.0e-109 398.7 318 60.4
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.4e-106 390.2 317 59.3
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.7e-105 386.0 400 49.5
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.5e-105 385.6 292 60.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.7e-102 375.2 289 63.0
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 6.2e-102 374.8 317 59.3
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 8.9e-101 370.9 292 57.9
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 5.8e-100 368.2 324 54.3
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.7e-99 366.7 278 62.9
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 8.3e-99 364.4 267 63.7
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.4e-98 363.6 284 61.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.2e-94 348.2 297 56.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.8e-93 344.7 317 53.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 6.8e-93 344.7 332 53.3
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.9e-91 339.3 337 50.1
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.4e-91 338.2 316 53.8
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 9.2e-90 334.3 321 50.8
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.5e-87 327.0 321 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 3.1e-85 319.3 316 50.3
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 4.9e-83 312.0 299 53.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.7e-80 303.5 243 59.3
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 9.6e-79 297.7 291 50.5
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.6e-76 289.7 254 55.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 5.4e-74 282.0 207 63.8
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.2e-73 280.8 353 41.6
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 8.4e-67 258.1 164 73.2
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.0e-65 251.9 282 50.0
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.6e-62 243.8 199 57.3
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.1e-62 243.4 168 66.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.4e-61 240.0 165 68.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.4e-58 230.7 144 72.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 6.7e-56 221.9 151 69.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.3e-55 219.2 169 62.7
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.6e-46 190.7 132 65.9
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.4e-37 161.0 132 57.6
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.3e-32 143.7 110 59.1
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.8e-30 136.7 119 51.3
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.5e-28 131.0 105 61.9
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.6e-28 130.2 90 65.6
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 5.9e-28 129.0 69 79.7
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 3.2e-26 123.2 75 69.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.3e-22 111.3 86 59.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.2e-22 110.5 100 52.0
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.8e-22 110.2 73 65.8
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.1e-21 108.2 98 51.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.1e-21 106.3 124 46.0
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.2e-20 104.8 129 45.7
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 5.2e-16 89.4 72 56.9
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 2.0e-15 87.4 93 44.1
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.0e-08 65.1 42 66.7
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.7e-07 59.3 89 47.2
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.2e-06 57.4 57 49.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.7e-06 56.6 51 51.0


User provided reference genes

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