Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 7.4e-141 503.8 248 100.0
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 6.7e-134 480.7 248 94.8
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 8.6e-97 357.5 210 80.5
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 4.7e-95 351.7 248 67.7
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 4.4e-69 265.4 190 63.7
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 4.9e-68 261.9 206 58.7
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.9e-67 260.0 199 61.3
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 2.7e-66 256.1 225 54.7
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 4.6e-66 255.4 189 61.4
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 1.3e-65 253.8 233 52.8
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 3.0e-65 252.7 246 53.7
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 3.9e-65 252.3 190 60.5
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 3.9e-65 252.3 181 62.4
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.1e-65 251.9 190 60.5
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 6.6e-65 251.5 243 49.4
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 8.6e-65 251.1 217 55.3
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.9e-64 250.0 190 60.5
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 2.5e-64 249.6 182 61.5
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 5.6e-64 248.4 193 58.5
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.2e-63 247.3 188 59.6
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.6e-63 246.9 190 58.4
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 1.1e-62 244.2 214 54.7
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 1.4e-62 243.8 188 59.0
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.8e-62 243.4 239 50.6
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.4e-62 243.0 189 58.7
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 2.4e-62 243.0 196 57.7
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 3.1e-62 242.7 239 50.2
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 1.2e-61 240.7 195 56.4
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 1.5e-61 240.4 190 56.8
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 2.6e-61 239.6 206 56.3
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.6e-61 239.6 181 59.1
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.4e-61 239.2 196 55.1
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 7.6e-61 238.0 181 60.2
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.2e-60 236.5 188 59.6
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 3.8e-60 235.7 181 61.3
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.9e-60 235.3 172 61.6
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 8.4e-60 234.6 184 58.7
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.1e-59 234.2 188 58.5
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.9e-59 233.4 210 53.8
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.4e-59 233.0 178 59.6
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 4.2e-59 232.3 191 55.0
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 4.2e-59 232.3 176 60.2
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 9.2e-59 231.1 184 53.3
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 9.2e-59 231.1 176 60.2
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 9.2e-59 231.1 177 57.6
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 1.2e-58 230.7 189 57.1
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 2.1e-58 229.9 202 53.0
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 2.1e-58 229.9 191 53.9
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 2.7e-58 229.6 217 49.3
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.0e-57 227.6 178 56.2
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.3e-57 227.3 202 50.5
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 2.3e-57 226.5 200 50.0
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 5.1e-57 225.3 179 55.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 5.1e-57 225.3 179 55.3
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 6.6e-57 224.9 184 51.1
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.6e-57 224.9 178 55.6
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.5e-56 223.8 176 57.4
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.5e-56 223.8 176 57.4
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.5e-56 223.8 231 45.9
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.9e-56 223.4 190 53.7
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.9e-56 223.4 194 52.1
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.9e-56 223.4 179 54.7
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 3.3e-56 222.6 171 58.5
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 1.6e-55 220.3 183 54.1
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.6e-55 220.3 170 58.2
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 1.6e-55 220.3 177 56.5
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.1e-55 219.9 184 51.6
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.1e-55 219.9 185 53.5
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 6.2e-55 218.4 176 56.8
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 6.2e-55 218.4 176 56.8
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.4e-54 217.2 186 54.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 1.4e-54 217.2 195 50.8
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 3.1e-54 216.1 174 56.9
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 4.0e-54 215.7 176 56.2
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 4.0e-54 215.7 187 52.9
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 6.9e-54 214.9 180 55.0
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 9.0e-54 214.5 178 52.2
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.5e-53 213.8 172 52.3
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 2.0e-53 213.4 196 51.5
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 5.8e-53 211.8 173 53.2
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.7e-52 210.3 200 48.5
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 8.4e-52 208.0 152 61.8
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.9e-51 206.8 179 53.6
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 3.2e-51 206.1 161 54.7
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 7.1e-51 204.9 179 53.1
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.2e-50 204.1 164 54.9
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 7.8e-50 201.4 168 54.8
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 4.5e-45 185.7 168 48.8
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 1.3e-44 184.1 178 47.8
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.2e-44 183.3 178 48.9
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.6e-40 168.7 155 51.0
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.5e-37 160.6 116 62.1
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 1.7e-36 157.1 167 49.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 4.2e-35 152.5 163 50.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 4.2e-35 152.5 179 41.3
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 9.3e-35 151.4 130 55.4
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.6e-31 140.6 123 51.2
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 1.1e-30 137.9 134 49.3
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 8.4e-28 128.3 218 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 3.0e-25 119.8 134 40.3
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.9e-19 100.5 72 56.9
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.1e-18 97.1 72 56.9
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 3.6e-18 96.3 85 51.8
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.0e-17 94.7 165 30.3
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.4e-17 94.4 81 50.6
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 5.1e-17 92.4 191 27.2
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 6.7e-17 92.0 170 32.4
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 2.0e-16 90.5 167 32.9
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.3e-15 87.8 124 40.3
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.3e-15 87.8 167 31.7
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 4.8e-15 85.9 161 29.2
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 1.4e-14 84.3 182 26.9
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 3.1e-14 83.2 171 28.1
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 4.1e-14 82.8 61 63.9
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.2e-13 81.3 139 28.1
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.5e-13 80.9 165 28.5
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.5e-13 80.9 193 26.4
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 2.0e-13 80.5 165 28.5
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 2.0e-13 80.5 52 61.5
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 2.6e-13 80.1 148 29.1
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 2.6e-13 80.1 173 25.4
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 3.4e-13 79.7 185 25.4
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 4.5e-13 79.3 58 55.2
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 5.9e-13 79.0 168 26.8
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 1.0e-12 78.2 178 25.8
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.3e-12 77.8 145 26.9
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 5.0e-12 75.9 205 23.9
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 6.5e-12 75.5 153 26.8
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 6.5e-12 75.5 186 25.3
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 8.5e-12 75.1 123 38.2
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 1.4e-11 74.3 187 25.1
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 2.5e-11 73.6 162 24.7
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 3.2e-11 73.2 152 26.3
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.2e-11 73.2 180 23.3
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 7.2e-11 72.0 189 22.8
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 9.4e-11 71.6 158 25.9
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.6e-10 70.9 180 22.8
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.6e-10 70.9 134 28.4
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.7e-10 70.1 142 25.4
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.7e-10 70.1 164 23.8
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 3.6e-10 69.7 151 23.8
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 6.1e-10 68.9 164 23.8
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 1.0e-09 68.2 175 25.1
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.4e-09 67.8 140 27.1
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 2.3e-09 67.0 188 23.9
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 2.3e-09 67.0 173 23.7
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 8.8e-09 65.1 115 32.2
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 1.5e-08 64.3 188 22.9
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.0e-08 63.9 149 26.8
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 4.4e-08 62.8 171 24.0
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 4.4e-08 62.8 176 26.7
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.3e-07 61.2 125 24.8
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 2.2e-07 60.5 109 25.7
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.1e-06 56.6 58 39.7
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 9.1e-06 55.1 36 55.6


User provided reference genes

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