Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.2e-128 461.1 235 100.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.3e-118 427.2 227 95.6
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.9e-99 365.2 234 80.3
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 8.1e-97 357.5 234 79.5
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.3e-94 350.1 234 76.9
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.7e-92 342.4 234 76.1
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 6.6e-91 337.8 234 74.4
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.3e-90 335.5 233 74.7
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 9.6e-90 334.0 234 73.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.6e-89 333.2 234 73.5
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 6.2e-89 331.3 234 73.1
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 8.1e-89 330.9 232 74.1
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 4.0e-88 328.6 234 72.2
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.2e-87 327.0 234 72.2
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.5e-87 326.6 234 71.8
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 4.5e-87 325.1 234 71.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.9e-87 323.9 234 70.9
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.3e-86 323.6 234 70.5
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.3e-86 323.6 234 71.8
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.2e-86 322.8 229 73.8
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.9e-86 322.4 235 71.5
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.9e-86 321.6 229 73.8
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 6.4e-86 321.2 232 72.0
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 8.4e-86 320.9 235 71.9
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.1e-85 320.5 232 73.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.4e-85 320.1 228 71.9
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.4e-85 319.3 229 72.5
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.4e-85 319.3 229 72.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.2e-85 318.5 235 71.1
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.5e-85 318.2 235 71.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.5e-85 318.2 235 71.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 5.5e-85 318.2 234 71.8
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.2e-84 317.0 234 70.5
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.6e-84 316.6 234 70.1
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.9e-84 314.3 234 69.2
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.0e-83 313.9 234 69.2
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.3e-83 313.5 234 69.2
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.3e-83 313.5 234 69.2
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.8e-83 313.2 233 71.2
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.3e-83 312.8 234 69.7
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.0e-83 312.4 232 69.0
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.0e-83 312.4 235 69.8
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.0e-83 312.4 234 69.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.0e-83 312.4 234 69.7
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 6.7e-83 311.2 234 70.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-83 310.8 226 72.1
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.1e-82 310.5 237 69.6
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.1e-82 310.5 237 69.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.1e-82 310.5 233 70.4
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.5e-82 310.1 234 69.7
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.5e-82 310.1 234 70.5
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.9e-82 309.7 226 71.2
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.5e-82 309.3 237 69.2
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 5.6e-82 308.1 233 70.0
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 7.4e-82 307.8 234 68.8
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.6e-81 306.6 234 67.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.6e-81 306.6 234 67.5
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.1e-81 306.2 233 69.5
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.8e-81 305.8 234 69.2
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 3.7e-81 305.4 227 71.4
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.7e-81 305.4 232 68.5
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 6.2e-81 304.7 231 69.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 6.2e-81 304.7 227 70.9
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.1e-81 304.3 235 66.8
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 8.1e-81 304.3 226 70.4
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 8.1e-81 304.3 233 67.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 8.1e-81 304.3 224 70.1
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.1e-80 303.9 231 69.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.8e-80 303.1 226 70.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.8e-80 303.1 228 70.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 5.3e-80 301.6 234 66.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 6.9e-80 301.2 228 69.7
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 9.0e-80 300.8 227 69.6
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.0e-79 299.7 234 67.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.6e-79 299.3 228 70.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.6e-79 299.3 228 71.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 5.8e-79 298.1 226 69.0
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 7.6e-79 297.7 234 67.1
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.0e-78 297.4 234 69.2
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-78 296.6 234 67.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-78 296.6 234 67.9
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.2e-78 296.2 228 69.7
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 4.9e-78 295.0 228 69.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 4.9e-78 295.0 226 68.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 4.9e-78 295.0 232 65.9
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 8.4e-78 294.3 227 70.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.4e-77 293.5 228 69.3
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.2e-77 292.4 225 70.7
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.6e-76 290.0 225 70.2
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.6e-76 290.0 225 70.2
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.6e-76 290.0 228 68.9
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.7e-76 289.3 228 65.4
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 6.0e-76 288.1 205 73.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.9e-76 287.7 224 67.4
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.0e-75 287.3 209 71.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.3e-75 287.0 227 67.8
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 3.0e-75 285.8 229 69.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 3.9e-75 285.4 220 70.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 5.1e-75 285.0 227 64.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.9e-74 283.1 229 68.6
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 3.3e-74 282.3 213 70.0
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.3e-73 280.4 228 65.4
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.8e-73 279.3 222 67.1
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.7e-73 278.9 226 67.7
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.8e-73 278.5 226 67.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-72 277.3 226 67.3
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.1e-72 277.3 233 63.9
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 4.1e-72 275.4 210 70.0
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.3e-72 275.0 226 66.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.5e-71 271.9 226 66.4
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 2.9e-70 269.2 204 66.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.4e-69 266.9 225 64.4
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 3.2e-69 265.8 204 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.2e-69 265.4 225 63.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.2e-68 263.8 227 61.7
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 3.9e-67 258.8 225 61.3
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.1e-66 257.3 206 65.5
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.9e-66 256.5 226 61.5
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.8e-65 252.7 225 60.4
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.4e-64 250.4 197 66.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 4.1e-64 248.8 228 58.8
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 8.5e-62 241.1 211 64.0
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 5.1e-59 231.9 235 54.5
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 9.7e-58 227.6 236 53.0
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.4e-55 219.2 192 60.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.4e-55 219.2 192 60.9
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.2e-54 216.5 210 57.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 2.2e-54 216.5 241 50.2
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 4.2e-53 212.2 198 60.6
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 7.2e-53 211.5 232 54.7
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.6e-52 209.1 237 52.7
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.8e-51 206.8 237 53.2
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.0e-46 191.0 157 63.1
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.2e-46 189.9 219 53.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 5.7e-42 175.3 112 75.9
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.3e-41 174.1 110 76.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.0e-38 164.5 225 44.4
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 5.0e-38 162.2 94 81.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.2e-36 157.5 211 44.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.2e-29 132.9 100 67.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 9.5e-29 131.3 239 39.3
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.6e-26 123.2 222 38.7
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 4.5e-23 112.5 74 73.0
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.5e-21 107.5 75 68.0
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 3.3e-21 106.3 227 33.5
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 3.6e-20 102.8 238 31.5
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 8.0e-20 101.7 216 34.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.5e-18 97.4 70 67.1
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.4e-18 96.3 232 33.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 8.3e-17 91.7 70 64.3
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.6e-15 87.4 66 66.7
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.7e-14 84.0 58 70.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.2e-12 77.8 65 61.5
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.5e-10 70.9 140 37.9
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 2.2e-09 67.0 66 60.6
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.4e-08 64.3 38 78.9
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 2.7e-07 60.1 53 62.3
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 2.7e-07 60.1 53 62.3
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 1.0e-06 58.2 49 65.3
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.3e-06 57.8 39 71.8


User provided reference genes

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