Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 7.3e-195 683.7 349 100.0
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 1.9e-166 589.3 308 95.5
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 1.1e-142 510.4 358 73.5
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 6.3e-130 468.0 346 68.2
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 2.4e-129 466.1 346 67.6
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 3.1e-129 465.7 350 70.0
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 5.4e-129 464.9 293 77.1
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 5.4e-129 464.9 338 68.0
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 1.2e-128 463.8 343 68.5
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 7.7e-128 461.1 352 67.9
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 1.0e-127 460.7 348 67.5
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 1.1e-126 457.2 284 76.1
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 2.1e-125 453.0 344 67.7
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 2.1e-125 453.0 307 73.0
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 2.1e-125 453.0 305 72.5
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 6.1e-125 451.4 343 65.0
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 8.0e-125 451.1 284 75.4
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 5.2e-124 448.4 307 72.0
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 5.2e-124 448.4 336 67.9
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 3.4e-123 445.7 280 74.3
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 3.4e-123 445.7 286 75.2
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 7.5e-123 444.5 281 76.9
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 9.8e-123 444.1 284 74.3
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 1.7e-122 443.4 284 75.4
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 3.7e-122 442.2 284 75.4
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 4.9e-122 441.8 284 73.2
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 6.3e-122 441.4 284 75.4
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 6.3e-122 441.4 284 75.0
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 8.3e-122 441.0 284 75.4
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 8.3e-122 441.0 348 65.8
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 1.1e-121 440.7 296 72.3
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 1.8e-121 439.9 340 65.6
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 2.4e-121 439.5 284 72.9
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 5.4e-121 438.3 284 73.2
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 7.0e-121 438.0 284 72.9
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 9.2e-121 437.6 284 74.3
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 1.2e-120 437.2 347 64.6
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 1.6e-120 436.8 346 63.3
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 2.0e-120 436.4 288 70.5
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 2.7e-120 436.0 285 73.3
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 5.9e-120 434.9 356 62.6
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 1.0e-119 434.1 414 58.2
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 1.0e-119 434.1 313 68.1
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 2.9e-119 432.6 281 72.2
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 3.8e-119 432.2 281 73.3
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 3.8e-119 432.2 347 64.0
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 3.8e-119 432.2 346 64.5
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 5.0e-119 431.8 350 64.0
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 5.0e-119 431.8 281 73.0
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 8.6e-119 431.0 349 63.3
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 1.5e-118 430.3 281 73.0
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 1.9e-118 429.9 337 64.1
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 3.3e-118 429.1 281 71.9
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 3.3e-118 429.1 298 69.8
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 5.6e-118 428.3 335 64.8
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 7.3e-118 427.9 281 71.9
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 9.5e-118 427.6 302 68.5
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 9.5e-118 427.6 290 71.7
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 1.6e-117 426.8 281 72.2
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 2.1e-117 426.4 281 73.0
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 3.6e-117 425.6 312 66.7
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 3.6e-117 425.6 267 74.9
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 4.7e-117 425.2 281 72.6
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 4.7e-117 425.2 415 54.9
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 6.1e-117 424.9 281 70.8
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 6.1e-117 424.9 302 68.5
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 6.1e-117 424.9 281 73.0
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 1.8e-116 423.3 346 63.9
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 2.3e-116 422.9 344 63.7
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 1.2e-115 420.6 281 70.5
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 2.6e-115 419.5 345 63.8
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 4.4e-115 418.7 347 63.1
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 5.7e-115 418.3 284 68.7
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 7.5e-115 417.9 252 76.2
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 1.3e-114 417.2 343 62.7
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 2.2e-114 416.4 320 66.6
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 3.7e-114 415.6 302 67.2
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 1.4e-113 413.7 260 75.4
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 1.8e-113 413.3 305 68.2
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 5.9e-112 408.3 281 70.5
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 1.7e-111 406.8 280 69.6
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 3.9e-111 405.6 292 66.8
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 5.6e-110 401.7 352 64.8
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 2.1e-109 399.8 280 69.6
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 3.6e-109 399.1 279 69.5
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 1.0e-108 397.5 317 63.4
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 2.3e-108 396.4 308 65.3
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 2.3e-108 396.4 289 68.2
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 8.3e-106 387.9 278 66.5
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 4.3e-102 375.6 323 61.0
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 2.1e-101 373.2 229 77.3
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 1.5e-99 367.1 332 59.6
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 7.8e-96 354.8 283 62.5
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 8.9e-92 341.3 274 57.3
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 1.1e-86 324.3 258 56.2
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 2.1e-85 320.1 324 54.9
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 1.1e-84 317.8 272 59.2
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 1.3e-82 310.8 263 55.9
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 8.4e-82 308.1 268 60.4
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.1e-81 307.8 262 52.7
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 1.7e-79 300.4 279 57.3
Migut.L01091 Erythranthe guttata HOM05D004993 ORTHO05D008532 1.8e-68 263.8 157 72.0
Psat2g091800 Pisum sativum HOM05D004993 ORTHO05D008532 2.1e-64 250.4 169 68.6
CBR_g46806 Chara braunii HOM05D004993 ORTHO05D008532 4.0e-60 236.1 283 45.9
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 2.9e-58 229.9 147 72.8
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 1.9e-54 217.2 155 67.1
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 2.5e-54 216.9 135 74.8
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 1.2e-51 208.0 134 73.1
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.2e-48 198.0 140 65.7
ECA248G2500 Erigeron canadensis HOM05D004993 ORTHO05D008532 1.5e-46 191.0 286 40.9
Actinidia13671 Actinidia chinensis HOM05D004993 ORTHO05D008532 7.9e-40 168.7 97 78.4
MCO14G082 Micromonas commoda HOM05D004993 ORTHO05D008532 1.4e-33 147.9 315 34.9
Pp3c27_8380 Physcomitrium patens HOM05D004993 ORTHO05D008532 1.2e-32 144.8 256 34.0
Cre10.g442950 Chlamydomonas reinhardtii HOM05D004993 ORTHO05D008532 1.5e-30 137.9 269 30.9
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 6.8e-15 85.9 99 49.5
SEGI_13194 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 1.2e-14 85.1 64 57.8
Migut.G01033 Erythranthe guttata HOM05D004993 ORTHO05D008532 7.0e-12 75.9 50 66.0


User provided reference genes

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