Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1739.2 839 100.0
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1674.1 839 96.2
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1446.4 854 82.1
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1402.1 833 81.2
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1310.8 842 75.3
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1299.3 837 74.7
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1278.8 832 73.7
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1275.4 838 73.0
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1273.5 834 72.4
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1270.8 834 73.3
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1268.8 838 72.1
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1266.9 839 73.3
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1265.4 829 73.0
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1265.4 832 72.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1264.6 836 72.1
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1263.1 835 71.7
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 835 73.4
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1260.0 839 72.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1258.4 832 73.2
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1258.0 836 72.5
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 834 72.8
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 834 72.8
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 842 72.1
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 839 71.8
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 837 72.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1255.7 832 73.1
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 832 73.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 842 72.4
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1251.9 837 72.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1251.5 832 72.0
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 837 72.2
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1249.2 835 72.0
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1248.8 832 72.7
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1247.3 845 71.1
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1245.3 838 71.2
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1243.8 835 70.9
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1242.6 833 71.8
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1242.6 835 71.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1241.9 835 71.5
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1241.5 835 71.3
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1241.1 840 71.0
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1238.0 833 72.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1237.6 831 71.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1237.6 832 72.2
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1236.9 830 71.1
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1236.9 832 71.4
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1228.8 834 71.2
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 836 70.8
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 834 70.6
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1226.5 835 70.5
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1224.5 841 69.8
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1222.6 841 69.4
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1221.5 840 69.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1219.1 832 70.4
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1217.6 836 69.6
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1215.7 838 70.2
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1214.9 838 70.2
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1213.4 975 62.8
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1210.3 835 70.2
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1208.4 837 69.8
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1208.0 839 69.6
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1206.4 835 70.1
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1205.3 870 67.6
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1200.7 831 70.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1198.0 834 68.7
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1190.3 787 74.0
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1186.0 840 67.7
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 0.0e+00 1185.2 669 85.8
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1170.6 829 67.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1169.1 850 66.9
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1166.4 833 67.6
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1160.6 834 68.0
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1154.0 857 65.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 731 75.1
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 837 67.4
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1129.0 941 61.6
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1125.2 834 66.8
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1122.8 852 64.7
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1122.1 837 65.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1117.8 830 65.1
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1115.1 758 70.6
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1109.4 830 64.6
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1109.4 837 64.3
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1108.2 839 64.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1107.0 837 64.5
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1106.7 837 64.6
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1106.3 836 63.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1105.1 832 64.3
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1104.4 841 64.7
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1102.0 831 64.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1099.0 832 64.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1098.6 832 63.9
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1098.2 833 63.6
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1097.8 845 63.2
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1097.4 843 62.8
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1090.1 837 63.4
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1085.5 831 63.8
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.3e-277 959.9 833 56.5
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.7e-267 925.6 651 69.7
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.7e-261 906.4 570 75.4
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 7.8e-259 897.5 830 55.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 5.4e-252 874.8 896 50.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 9.9e-246 854.0 849 50.9
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 8.6e-242 840.9 853 51.0
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 2.5e-209 733.0 829 48.7
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.1e-171 605.5 465 63.0
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 4.8e-168 595.9 399 69.7
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.3e-149 533.9 401 65.8
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 8.9e-138 495.4 364 65.7
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.6e-131 473.4 354 62.4
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.9e-121 438.7 264 79.5
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 3.8e-104 383.6 872 33.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.4e-103 381.7 1128 27.1
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 4.5e-97 360.1 489 45.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.8e-96 357.1 824 33.6
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.2e-95 353.6 232 74.6
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 9.3e-95 352.4 266 63.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.7e-91 340.5 309 55.7
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.4e-90 338.6 789 32.8
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.9e-88 330.9 192 81.8
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.9e-88 330.9 196 76.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 4.6e-86 323.6 300 58.0
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 3.0e-85 320.9 195 79.5
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.4e-74 284.6 248 60.9
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 3.2e-63 247.7 563 33.0
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 3.2e-47 194.5 197 49.2
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 8.0e-46 189.9 572 28.8
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 8.0e-46 189.9 572 28.8
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.8e-43 181.4 161 56.5
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-34 152.9 96 71.9
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 8.6e-32 143.3 101 68.3
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.6e-30 137.9 133 54.1
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 8.9e-29 133.3 96 64.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 7.5e-28 130.2 205 38.5
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.7e-24 119.0 80 71.2
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 5.6e-23 114.0 63 81.0
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.7e-22 110.9 63 81.0
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.3e-21 108.6 62 71.0
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 4.4e-20 104.4 113 52.2
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 3.2e-18 98.2 53 81.1
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.2e-18 96.7 64 71.9
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.6e-17 95.9 144 41.0
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.6e-17 95.9 55 78.2
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.5e-17 94.7 112 48.2
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 4.7e-14 84.3 87 44.8
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.4e-13 82.8 100 43.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.2e-12 79.7 103 41.7
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 5.6e-07 60.8 148 30.4
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.2e-06 59.7 106 33.0
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.6e-06 58.2 329 23.4
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 6.2e-06 57.4 330 23.0
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 6.2e-06 57.4 330 23.0
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.1e-06 57.0 142 28.2
Sc16g0001440 Simmondsia chinensis HOM05D002634 ORTHO05D003100 8.1e-06 57.0 161 28.0


User provided reference genes

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