Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 0.0e+00 1317.8 718 100.0
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 0.0e+00 1164.8 770 85.8
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 6.0e-260 901.0 776 68.3
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 4.6e-244 848.2 780 64.1
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.1e-218 763.8 801 56.8
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.2e-214 749.6 803 55.9
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.1e-212 743.0 809 56.1
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 2.3e-211 739.6 813 54.5
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 8.8e-211 737.6 789 54.5
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 8.8e-211 737.6 831 54.4
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 7.5e-210 734.6 794 56.5
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 1.4e-208 730.3 811 56.2
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.6e-207 726.9 792 56.3
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 4.5e-207 725.3 774 54.8
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.5e-205 720.3 795 56.2
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 3.2e-205 719.2 797 55.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 3.2e-205 719.2 796 54.8
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-205 718.8 790 55.6
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 7.2e-205 718.0 772 56.1
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 9.4e-205 717.6 778 54.2
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.6e-204 716.8 784 54.2
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 6.1e-204 714.9 772 56.7
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.4e-203 713.8 798 53.4
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.0e-203 712.2 808 55.4
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.0e-203 712.2 812 53.0
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 6.8e-203 711.4 817 52.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 6.8e-203 711.4 790 55.9
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 1.5e-202 710.3 781 54.9
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 7.5e-202 708.0 802 53.9
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 7.5e-202 708.0 805 53.8
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 9.8e-202 707.6 785 54.6
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.8e-201 706.1 746 55.0
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 3.7e-201 705.7 812 53.6
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 3.7e-201 705.7 800 53.4
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 4.8e-201 705.3 786 55.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 6.3e-201 704.9 798 54.9
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 8.3e-201 704.5 784 56.4
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 4.1e-200 702.2 774 54.8
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-199 700.7 784 56.0
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.6e-199 700.3 773 54.5
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.0e-198 697.6 802 53.0
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.0e-198 697.6 785 52.7
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 3.8e-198 695.7 786 53.6
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 6.5e-198 694.9 802 52.2
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.1e-197 694.1 803 51.3
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 2.1e-196 689.9 796 53.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 2.8e-196 689.5 792 53.8
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 6.8e-195 684.9 812 51.6
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 8.8e-195 684.5 773 54.7
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.5e-194 683.7 774 55.4
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.3e-193 680.6 806 51.9
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.8e-193 679.5 798 51.5
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 8.3e-193 677.9 796 52.9
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 5.4e-192 675.2 793 52.7
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.2e-191 674.1 774 51.9
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.0e-191 673.3 796 51.5
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 2.7e-191 672.9 798 52.3
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 3.5e-191 672.5 797 51.7
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 5.9e-191 671.8 796 52.5
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 5.9e-191 671.8 784 54.3
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 5.9e-191 671.8 817 51.2
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 7.8e-191 671.4 782 53.1
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.3e-190 670.6 785 52.9
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 5.0e-190 668.7 801 52.3
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 6.6e-190 668.3 777 54.1
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 7.3e-189 664.8 772 51.9
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.5e-186 657.1 778 53.6
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.0e-186 656.8 788 52.8
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.1e-184 651.0 795 51.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 3.2e-184 649.4 791 51.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.7e-183 646.4 784 51.7
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.0e-182 644.4 813 51.0
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.7e-182 643.7 806 49.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.2e-180 637.5 799 49.3
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.4e-179 634.0 791 50.9
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 5.2e-179 632.1 771 49.3
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 4.4e-178 629.0 797 50.3
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 1.7e-177 627.1 802 50.2
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 8.3e-177 624.8 734 53.7
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.8e-172 609.8 772 49.7
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-172 609.4 802 48.1
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.8e-171 607.1 735 51.7
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.8e-171 607.1 854 47.4
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.2e-170 604.4 799 46.8
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.2e-162 577.8 794 49.7
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.5e-162 577.4 774 47.5
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.4e-162 576.2 804 44.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.3e-158 564.3 802 47.3
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 4.3e-157 559.3 722 48.2
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.1e-155 554.7 648 54.3
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.8e-155 553.9 799 47.8
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.9e-155 551.6 755 48.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 2.0e-154 550.4 797 47.2
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 3.2e-152 543.1 811 46.4
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 2.1e-151 540.4 811 46.2
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 3.5e-151 539.7 800 46.5
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.3e-148 531.2 790 47.2
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.6e-148 530.8 794 46.9
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.4e-147 527.7 791 46.5
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.8e-147 527.3 771 45.0
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 3.1e-147 526.6 660 50.9
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 7.4e-141 505.4 794 45.1
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.6e-141 505.0 802 41.3
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.1e-140 503.8 899 42.0
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.1e-139 500.0 828 44.4
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.4e-138 496.5 769 41.9
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 5.8e-138 495.7 781 42.3
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-136 491.1 767 42.0
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 4.2e-136 489.6 767 41.6
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.7e-132 476.5 786 40.3
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 4.6e-127 459.5 751 42.5
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.3e-123 446.0 584 52.6
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.0e-122 444.1 704 43.6
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 5.7e-117 426.0 416 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 9.7e-117 425.2 642 46.6
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.0e-114 417.5 698 40.1
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 7.7e-114 415.6 597 48.6
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 9.4e-104 382.1 878 36.3
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.3e-101 373.6 288 66.7
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 1.1e-99 368.6 321 59.8
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 6.5e-97 359.4 434 55.3
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 8.0e-95 352.4 434 55.3
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.4e-94 351.7 517 44.1
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.2e-88 329.3 442 48.0
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.0e-87 325.9 528 48.5
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 3.0e-86 323.9 552 44.7
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.4e-83 315.1 434 42.9
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.3e-80 303.9 253 62.5
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.8e-73 280.4 647 37.4
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 1.5e-72 278.5 814 32.3
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 4.0e-62 243.8 510 34.9
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 6.4e-60 236.5 770 30.3
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 2.1e-58 231.5 456 37.7
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 1.0e-57 229.2 891 27.4
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 7.3e-56 223.0 387 43.2
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 9.2e-51 206.1 402 38.6
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.2e-50 205.7 356 45.8
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.1e-43 180.6 387 37.2
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 6.6e-41 173.3 766 26.2
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 1.2e-39 169.1 187 52.4
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.1e-30 139.4 337 35.9
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 3.1e-30 137.9 135 56.3
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-29 135.6 307 37.5
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 4.5e-29 134.0 182 51.6
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 3.8e-28 131.0 151 50.3
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 2.1e-23 115.2 113 47.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.8e-23 114.0 532 26.7
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.4e-20 103.2 142 44.4
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-18 99.4 102 52.9
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-17 96.3 210 37.1
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.8e-17 95.5 106 51.9
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 1.6e-15 89.0 89 51.7
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.8e-15 88.2 82 59.8
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.2e-15 86.7 134 44.8
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 1.8e-14 85.5 85 52.9
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.3e-14 84.0 285 29.1
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.8e-12 77.8 72 56.9
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.8e-12 77.8 72 56.9
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.9e-11 75.5 78 60.3
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-11 75.5 346 27.7
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.5e-11 73.9 78 50.0
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 2.1e-10 72.0 112 41.1
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.7e-10 71.6 72 54.2
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-10 70.9 165 32.1
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.3e-09 68.6 241 31.1
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.9e-09 67.8 126 44.4
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.1e-09 67.4 121 39.7
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 3.3e-08 64.7 46 69.6
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 5.7e-08 63.9 51 60.8
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 7.4e-08 63.5 62 64.5
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.7e-08 63.2 164 34.8
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.7e-07 61.2 65 52.3
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.8e-06 58.9 118 39.8


User provided reference genes

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