Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.1e-196 689.9 361 100.0
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.0e-187 659.1 365 95.6
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 5.1e-151 538.1 388 76.5
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 5.0e-130 468.4 367 69.2
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.3e-117 427.2 346 63.9
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 7.3e-113 411.4 362 60.5
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 2.0e-110 403.3 337 60.8
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 3.4e-110 402.5 359 58.2
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.4e-108 397.1 372 56.5
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 2.4e-108 396.4 346 61.0
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.0e-107 393.3 363 57.3
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 3.5e-107 392.5 353 60.3
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.3e-106 390.6 359 59.3
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 3.9e-106 389.0 345 58.6
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.0e-106 388.7 353 60.1
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 8.6e-106 387.9 364 57.4
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.1e-105 387.5 347 61.1
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 9.5e-105 384.4 359 56.0
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 3.6e-104 382.5 362 58.0
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 6.2e-104 381.7 359 59.3
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 6.2e-104 381.7 365 56.2
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 8.1e-104 381.3 363 55.9
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 4.0e-103 379.0 347 59.4
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 5.2e-103 378.6 347 59.4
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 8.9e-103 377.9 359 55.4
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 3.4e-102 375.9 356 58.7
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 4.4e-102 375.6 352 58.2
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 5.8e-102 375.2 356 59.0
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 5.8e-102 375.2 356 58.4
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.7e-101 373.6 367 56.1
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 2.9e-101 372.9 362 57.5
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 6.4e-101 371.7 363 56.5
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 1.1e-100 370.9 346 57.2
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.1e-100 370.9 341 58.4
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.9e-100 370.2 345 56.8
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.1e-100 368.2 339 56.6
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.1e-100 368.2 339 56.6
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.1e-100 368.2 341 57.2
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 9.2e-100 367.9 360 55.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 9.2e-100 367.9 339 56.3
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.2e-100 367.9 339 57.2
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.2e-99 367.5 372 54.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 2.1e-99 366.7 345 57.4
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.7e-99 366.3 353 56.4
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.7e-99 366.3 368 53.8
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 7.8e-99 364.8 351 55.8
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.3e-98 364.0 339 56.3
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 3.0e-98 362.8 353 56.7
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.9e-97 360.1 348 54.0
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 2.5e-97 359.8 347 57.6
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.5e-97 359.8 426 49.1
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 5.6e-97 358.6 336 56.2
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.3e-97 358.2 345 55.9
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 9.5e-97 357.8 338 55.6
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 9.5e-97 357.8 339 56.6
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 2.8e-96 356.3 336 56.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 3.6e-96 355.9 361 55.4
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 3.6e-96 355.9 388 50.5
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 3.6e-96 355.9 354 53.4
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 2.3e-95 353.2 342 56.4
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.1e-95 352.8 322 60.9
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 3.1e-95 352.8 347 56.5
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.5e-94 350.5 351 54.7
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.0e-94 350.1 363 52.6
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 5.8e-94 348.6 338 56.5
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.3e-93 347.4 370 53.0
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.7e-93 347.1 350 54.0
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 4.9e-93 345.5 366 51.1
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 4.1e-92 342.4 388 50.8
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 4.1e-92 342.4 348 54.9
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.6e-91 340.5 358 51.1
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.6e-91 339.0 350 51.7
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 3.9e-90 335.9 336 55.7
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 8.6e-90 334.7 343 52.5
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.3e-89 332.8 355 51.8
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.6e-89 332.0 351 52.7
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 9.6e-89 331.3 351 51.6
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 1.2e-88 330.9 368 50.8
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.8e-88 329.7 352 51.1
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 4.7e-88 328.9 337 51.6
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 4.7e-88 328.9 348 50.6
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.1e-87 327.8 301 60.8
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.1e-87 326.2 356 51.4
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 3.8e-85 319.3 356 49.4
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 4.9e-85 318.9 355 50.7
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.1e-84 317.8 351 48.7
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.6e-83 313.9 351 49.6
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 2.1e-83 313.5 301 57.5
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.5e-83 312.8 352 50.0
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.6e-83 312.4 350 49.4
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 6.0e-83 312.0 359 50.4
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 3.0e-82 309.7 359 49.3
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.5e-81 307.4 297 55.9
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 5.6e-81 305.4 351 46.7
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.1e-80 303.5 353 48.2
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 3.6e-80 302.8 351 46.4
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 6.2e-80 302.0 345 49.9
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.4e-79 300.8 362 48.6
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.3e-79 298.9 351 48.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.4e-78 296.2 277 58.1
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.4e-76 290.8 356 46.9
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.0e-74 283.1 334 49.4
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 2.5e-73 280.0 341 45.2
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 4.3e-73 279.3 335 46.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 5.6e-73 278.9 297 52.9
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.6e-72 277.3 307 50.2
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 1.6e-72 277.3 288 54.2
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.1e-71 274.6 329 46.8
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 6.9e-71 271.9 332 47.0
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 6.9e-71 271.9 277 55.6
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.2e-70 271.2 349 45.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 2.9e-69 266.5 344 45.3
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 9.3e-68 261.5 366 42.9
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.7e-66 255.4 345 43.2
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.6e-64 250.8 345 43.5
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.4e-60 237.7 349 40.7
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 5.1e-58 229.2 284 49.3
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 5.7e-57 225.7 340 41.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 7.4e-57 225.3 333 42.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.6e-56 224.2 239 51.5
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 6.5e-53 212.2 229 52.4
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.4e-52 211.1 224 53.1
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 2.5e-52 210.3 207 52.7
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.2e-52 209.9 217 54.4
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.1e-47 194.9 127 76.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 4.1e-47 193.0 273 45.1
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 4.6e-43 179.5 299 39.1
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 2.8e-40 170.2 346 33.2
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 4.8e-40 169.5 246 45.9
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.1e-39 166.8 300 39.3
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 9.7e-33 145.2 451 27.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 7.7e-30 135.6 170 44.7
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 3.0e-26 123.6 125 49.6
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 2.8e-24 117.1 153 50.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 4.1e-23 113.2 355 28.7
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.6e-19 100.1 255 30.6
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.8e-15 87.8 191 35.1
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 9.5e-12 75.5 56 60.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.8e-10 71.2 204 28.9
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 9.8e-09 65.5 55 52.7
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.3e-08 65.1 55 52.7
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 2.7e-06 57.4 107 39.3


User provided reference genes

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