Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.8e-274 948.0 464 100.0
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 6.8e-156 554.7 464 65.3
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 5.1e-143 511.9 424 63.2
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 3.4e-139 499.2 467 58.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 4.6e-128 462.2 460 52.4
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 7.9e-120 434.9 466 50.6
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.9e-118 430.3 419 54.7
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 3.7e-117 426.0 467 48.8
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.6e-115 419.9 460 48.7
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.6e-115 419.9 461 48.4
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 3.4e-115 419.5 451 49.2
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 4.5e-115 419.1 471 48.6
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.0e-114 417.9 501 47.3
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 5.0e-114 415.6 461 49.5
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.1e-113 414.5 451 48.8
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.4e-113 414.1 454 50.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.9e-113 413.7 459 48.4
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.6e-112 410.6 455 49.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 2.1e-112 410.2 462 48.7
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 3.9e-111 406.0 451 47.7
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.9e-111 406.0 461 48.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.5e-110 404.1 459 46.4
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.9e-110 403.7 446 49.1
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 3.3e-110 402.9 481 47.2
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 9.7e-110 401.4 477 47.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.1e-108 397.9 446 48.7
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.8e-108 397.1 451 47.9
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.1e-108 396.0 452 47.6
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 5.3e-108 395.6 424 50.2
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 6.9e-108 395.2 455 47.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 9.0e-108 394.8 424 50.2
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.0e-107 393.7 454 46.9
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.5e-107 392.5 467 45.4
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.1e-105 387.9 454 47.4
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.4e-105 387.5 459 46.6
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 2.1e-104 383.6 391 50.4
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 2.7e-104 383.3 454 46.7
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.7e-104 383.3 452 43.8
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 1.8e-103 380.6 469 46.1
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 7.4e-102 375.2 494 44.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 6.3e-101 372.1 454 45.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.6e-99 366.7 451 45.9
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.7e-99 365.2 467 44.8
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.9e-98 363.2 452 43.6
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.8e-98 362.8 562 39.7
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 4.2e-97 359.4 451 44.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-96 357.8 454 43.6
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.7e-96 356.7 477 44.0
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 3.6e-96 356.3 410 47.8
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.4e-95 354.4 414 46.9
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.0e-95 353.2 470 41.9
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.4e-94 349.4 451 44.1
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.4e-94 348.6 441 43.1
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.4e-92 344.4 454 43.0
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 5.3e-92 342.4 452 43.6
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.0e-91 340.5 452 42.3
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.9e-91 339.0 411 45.0
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-90 337.4 452 44.0
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.5e-90 335.5 448 42.0
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 6.5e-90 335.5 466 42.1
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 3.3e-86 323.2 425 44.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 5.7e-86 322.4 304 55.6
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.7e-86 322.4 367 47.1
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 9.7e-86 321.6 409 45.0
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 7.0e-84 315.5 411 43.3
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 7.0e-84 315.5 411 43.3
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 9.1e-84 315.1 307 55.4
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.2e-83 314.7 437 42.1
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 5.9e-83 312.4 300 55.3
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-82 311.2 411 42.8
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 5.0e-82 309.3 440 41.8
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 5.0e-82 309.3 415 42.7
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.5e-81 307.8 300 56.0
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.1e-80 302.4 298 56.4
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.2e-78 298.1 465 38.5
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 7.5e-78 295.4 459 37.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.2e-77 293.9 300 53.3
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.2e-75 288.1 479 37.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.5e-73 281.2 360 45.8
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 7.2e-73 278.9 469 37.3
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.8e-71 272.3 286 48.6
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 7.5e-70 268.9 281 50.9
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.2e-69 267.3 270 53.3
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 8.3e-69 265.4 273 50.9
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.5e-67 260.0 247 53.4
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.8e-66 256.5 283 48.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-65 254.6 263 52.5
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.5e-65 253.8 263 52.5
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 5.6e-65 252.7 250 52.0
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 5.6e-65 252.7 287 48.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.0e-64 248.8 290 43.8
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.9e-61 240.4 291 46.0
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-60 238.0 256 50.8
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-60 236.9 415 36.4
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.5e-59 233.4 254 48.4
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.3e-58 231.5 297 44.1
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.7e-58 231.1 292 44.5
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.5e-57 228.0 293 45.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.5e-57 227.3 193 57.5
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.0e-55 219.9 254 49.6
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 4.0e-55 219.9 323 39.3
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 6.8e-55 219.2 247 48.6
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 8.9e-55 218.8 270 46.3
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.2e-54 218.4 256 49.6
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.2e-54 218.4 273 46.5
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 5.8e-54 216.1 272 44.1
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.7e-53 214.5 280 44.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.2e-53 214.2 270 45.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 4.9e-53 213.0 262 46.6
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.4e-53 212.6 263 46.4
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 8.3e-53 212.2 263 46.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 4.1e-52 209.9 218 51.8
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.4e-52 209.5 263 46.0
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.7e-51 207.2 271 45.4
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 7.8e-51 205.7 270 43.7
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.0e-50 205.3 270 44.1
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.0e-50 205.3 271 46.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.3e-50 204.1 298 41.9
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-49 201.1 270 43.3
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.5e-49 200.7 270 42.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.3e-49 199.1 270 43.3
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.8e-48 197.2 263 44.5
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 3.6e-48 196.8 270 42.6
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.1e-47 193.7 210 51.9
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 6.8e-47 192.6 275 42.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.9e-44 184.5 221 47.5
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.2e-43 181.8 272 41.2
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 3.0e-42 177.2 323 37.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.7e-40 169.9 184 48.4
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.2e-37 161.0 219 42.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.3e-34 151.8 280 35.0
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.9e-33 147.9 161 49.1
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.8e-32 144.1 124 55.6
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.4e-31 141.7 186 46.8
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 6.4e-29 132.9 165 44.8
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.9e-28 131.3 223 38.1
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.7e-26 124.8 147 45.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.1e-24 117.9 265 34.0
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 2.2e-21 107.8 95 52.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 6.0e-19 99.8 95 52.6
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 5.6e-17 93.2 85 49.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-15 88.6 123 38.2
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.2e-13 81.3 158 35.4
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 1.0e-10 72.4 79 44.3
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.5e-09 68.6 134 37.3
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.5e-09 67.8 78 48.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 9.6e-09 65.9 78 43.6
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.8e-08 64.3 188 29.3
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 4.0e-07 60.5 146 28.8
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-06 58.5 83 38.6
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 4.5e-06 57.0 89 37.1
MBI07_g05950_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 5.8e-06 56.6 51 52.9


User provided reference genes

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