Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 7.8e-180 633.6 314 100.0
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 5.6e-162 574.3 313 89.8
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.3e-161 573.2 313 88.5
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.3e-161 573.2 313 89.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 6.2e-161 570.9 313 88.2
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 8.1e-161 570.5 313 89.1
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.1e-160 570.1 313 88.5
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 3.1e-160 568.5 313 88.2
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 4.0e-160 568.2 313 88.8
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 9.0e-160 567.0 313 88.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 5.8e-159 564.3 314 88.5
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 7.6e-159 563.9 313 87.5
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 1.0e-158 563.5 313 88.2
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.3e-158 563.1 313 86.9
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.7e-158 562.8 313 87.2
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.2e-158 562.4 313 86.9
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 3.8e-158 561.6 313 86.6
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 4.9e-158 561.2 313 86.3
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 4.9e-158 561.2 313 86.6
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 6.5e-158 560.8 313 87.2
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 8.4e-158 560.5 313 87.2
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 1.1e-157 560.1 313 86.3
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.4e-157 559.7 313 87.9
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 4.2e-157 558.1 313 86.9
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 4.2e-157 558.1 314 86.9
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 4.2e-157 558.1 313 86.9
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 5.5e-157 557.8 313 86.3
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 5.5e-157 557.8 313 86.6
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.5e-157 557.8 315 87.0
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 9.3e-157 557.0 313 87.2
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 9.3e-157 557.0 313 87.2
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.2e-156 556.6 313 86.3
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.6e-156 556.2 313 85.9
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.6e-156 556.2 314 86.6
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.1e-156 555.8 314 87.6
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.1e-156 555.8 315 87.6
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.5e-156 555.1 314 86.3
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 4.6e-156 554.7 315 86.7
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 4.6e-156 554.7 313 85.9
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.0e-155 553.5 313 85.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.0e-155 553.5 314 86.9
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 1.0e-155 553.5 313 85.0
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.3e-155 553.1 314 86.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.3e-155 553.1 328 82.9
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.3e-155 553.1 313 85.3
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.8e-155 552.7 313 85.9
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 5.1e-155 551.2 313 85.3
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.1e-154 550.1 285 95.4
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.5e-154 549.7 313 85.9
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.5e-154 549.7 314 86.9
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 1.5e-154 549.7 313 85.6
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 2.5e-154 548.9 314 86.0
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.3e-154 548.1 314 86.3
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.3e-154 548.1 314 86.0
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.3e-154 548.1 314 86.0
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 4.3e-154 548.1 313 85.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 5.7e-154 547.7 313 85.0
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.3e-153 546.6 336 81.5
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.3e-153 546.6 313 84.7
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.6e-153 546.2 313 85.6
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 3.7e-153 545.0 313 84.0
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 3.7e-153 545.0 313 85.6
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 4.8e-153 544.7 313 83.7
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 6.2e-153 544.3 313 84.3
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.2e-153 544.3 314 85.0
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 6.2e-153 544.3 314 85.0
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 8.2e-153 543.9 313 85.3
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.1e-152 543.5 313 83.7
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.1e-152 543.5 313 84.3
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.8e-152 542.7 313 84.7
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.1e-152 542.0 313 83.4
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.1e-152 541.6 313 83.7
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 6.9e-152 540.8 313 85.0
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 9.0e-152 540.4 313 82.7
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.0e-152 540.4 313 85.3
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.2e-151 540.0 313 84.0
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.5e-151 539.7 320 83.8
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 2.0e-151 539.3 313 85.0
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.6e-151 538.9 310 84.8
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 7.6e-151 537.3 313 83.4
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 7.6e-151 537.3 313 84.3
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.3e-150 536.6 312 84.0
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 2.2e-150 535.8 313 82.4
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.8e-150 535.0 313 82.4
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 6.5e-150 534.3 309 83.8
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.1e-149 533.5 313 81.8
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 7.1e-149 530.8 313 83.4
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-148 530.0 313 83.1
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 4.6e-148 528.1 288 91.3
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 6.1e-148 527.7 313 84.0
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 7.9e-148 527.3 317 81.4
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.3e-147 526.6 309 84.1
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.8e-147 526.2 313 83.7
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 3.9e-147 525.0 315 82.9
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.9e-147 525.0 315 82.9
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.1e-147 524.6 315 82.5
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.1e-146 523.5 315 82.5
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.1e-146 523.5 315 82.5
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.5e-146 523.1 314 81.5
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.5e-146 523.1 313 81.2
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-146 523.1 337 77.7
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.5e-146 523.1 381 72.2
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 4.3e-146 521.5 309 83.5
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 4.3e-146 521.5 314 81.5
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.7e-146 521.2 315 82.5
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.7e-146 521.2 315 82.5
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 4.8e-145 518.1 304 83.2
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 8.2e-145 517.3 315 82.9
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.1e-144 516.9 313 82.1
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 2.4e-144 515.8 315 81.9
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.0e-142 510.4 316 81.6
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.7e-142 509.6 283 87.3
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 4.6e-140 501.5 313 81.2
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.8e-139 499.6 313 80.8
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.3e-139 499.2 313 80.2
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 6.7e-139 497.7 319 77.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 4.3e-138 495.0 311 80.4
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 8.2e-137 490.7 313 78.3
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 8.2e-137 490.7 292 79.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.4e-136 489.2 325 75.7
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 9.1e-136 487.3 313 77.6
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 2.6e-135 485.7 313 77.3
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 3.4e-135 485.3 317 74.1
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.2e-133 477.6 282 83.0
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 4.7e-132 474.9 462 57.1
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 2.4e-128 462.6 310 72.6
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 4.1e-128 461.8 313 74.8
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 7.7e-127 457.6 316 72.5
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 1.4e-123 446.8 312 67.9
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 3.8e-118 428.7 284 73.6
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.2e-117 425.6 240 86.2
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 4.2e-117 425.2 315 69.2
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.6e-116 423.3 260 80.8
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.2e-115 418.3 213 96.7
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 2.0e-82 310.1 252 60.7
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 9.2e-80 301.2 171 85.4
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.9e-77 293.5 192 76.6
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.6e-77 292.0 171 82.5
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 3.4e-74 282.7 310 49.4
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 3.9e-70 269.2 307 48.2
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 7.3e-69 265.0 272 53.3
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 3.6e-68 262.7 164 77.4
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.9e-64 250.4 151 78.1
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.9e-64 250.4 151 78.1
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.4e-64 250.0 189 64.0
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 3.6e-60 236.1 184 66.3
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 5.8e-58 228.8 277 48.7
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 4.9e-57 225.7 300 43.0
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 6.4e-57 225.3 112 94.6
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.2e-56 223.0 304 41.4
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 9.3e-56 221.5 182 62.1
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 3.0e-46 189.9 301 43.2
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.1e-45 188.0 113 77.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.1e-45 188.0 113 77.0
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.9e-45 187.2 129 71.3
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 9.6e-45 184.9 113 76.1
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.6e-44 184.1 139 69.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.4e-43 180.3 149 63.8
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.1e-43 179.9 100 83.0
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.9e-41 173.3 142 62.7
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.0e-38 164.9 116 69.8
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.1e-38 162.5 179 52.0
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 2.0e-34 150.6 277 34.3
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 5.0e-33 146.0 108 68.5
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.3e-30 137.9 116 62.1
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 3.1e-27 126.7 114 59.6
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 2.6e-26 123.6 80 78.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 2.6e-26 123.6 80 78.8
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 4.5e-26 122.9 70 80.0
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 6.5e-25 119.0 60 90.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 5.1e-22 109.4 72 66.7
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 3.1e-19 100.1 53 90.6
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.2e-18 98.2 117 44.4
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 7.7e-18 95.5 53 84.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.1e-15 87.4 89 57.3
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 4.7e-15 86.3 49 83.7
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 2.6e-13 80.5 101 50.5
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 5.9e-10 69.3 44 72.7
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 6.1e-07 59.3 37 64.9
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 1.0e-06 58.5 33 84.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 1.0e-06 58.5 33 84.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 1.0e-06 58.5 33 84.8
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 5.2e-06 56.2 37 62.2
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 8.8e-06 55.5 46 54.3


User provided reference genes

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