Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.2e-161 573.2 289 100.0
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 8.0e-155 550.4 287 96.2
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.3e-128 463.4 293 81.2
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.7e-120 436.4 285 77.5
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.2e-120 436.0 292 75.7
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.3e-117 426.0 286 75.2
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 6.9e-114 414.5 294 70.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.1e-108 397.1 293 68.6
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 4.3e-108 395.2 293 68.6
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.3e-107 393.7 288 69.4
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.6e-107 393.3 293 68.6
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 2.8e-107 392.5 290 67.2
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 3.7e-107 392.1 282 69.1
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-106 390.6 294 68.0
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.1e-106 390.6 287 70.7
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 6.9e-106 387.9 284 68.7
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.2e-105 387.1 287 68.6
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.5e-105 386.7 285 69.8
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.5e-105 386.7 292 67.8
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.0e-105 386.3 294 68.4
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 3.4e-105 385.6 280 67.5
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 4.5e-105 385.2 282 68.8
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 7.6e-105 384.4 284 69.0
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 9.9e-105 384.0 290 67.2
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 9.9e-105 384.0 278 68.3
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 2.2e-104 382.9 289 66.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.4e-103 380.2 295 67.1
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 2.5e-103 379.4 286 67.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 4.2e-103 378.6 255 72.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 4.2e-103 378.6 292 66.4
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 5.5e-103 378.3 286 67.1
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 7.1e-103 377.9 286 67.1
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.7e-102 375.9 223 79.8
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 6.0e-102 374.8 286 66.1
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 6.0e-102 374.8 283 67.5
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 7.9e-102 374.4 293 65.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 7.9e-102 374.4 309 61.8
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.0e-101 374.0 286 66.1
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 6.7e-101 371.3 280 66.4
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 6.7e-101 371.3 280 66.1
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.9e-100 369.8 281 65.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.3e-100 369.0 283 67.1
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 3.3e-100 369.0 286 66.1
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.6e-99 366.7 283 67.1
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 2.8e-99 365.9 286 66.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.8e-99 365.9 286 64.3
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.8e-99 365.9 282 64.9
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 6.2e-99 364.8 285 64.6
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 8.2e-99 364.4 282 64.2
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 2.4e-98 362.8 279 65.2
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.4e-98 362.8 285 66.7
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 5.3e-98 361.7 280 66.1
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 7.6e-97 357.8 287 64.5
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 8.4e-96 354.4 283 63.3
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.4e-95 353.6 317 59.3
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.2e-95 352.4 286 64.0
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 7.1e-95 351.3 280 63.6
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.1e-95 351.3 266 68.0
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 9.3e-95 350.9 284 64.8
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 2.1e-94 349.7 287 63.4
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 2.7e-94 349.4 256 68.0
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 7.9e-94 347.8 286 62.2
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 7.9e-94 347.8 286 61.5
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 7.9e-94 347.8 280 62.1
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 7.9e-94 347.8 257 65.8
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.0e-93 347.4 280 62.5
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.3e-93 346.3 294 63.9
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.0e-93 345.9 276 65.2
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 6.7e-93 344.7 293 59.4
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 8.7e-93 344.4 283 60.8
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 8.7e-93 344.4 280 62.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.1e-92 344.0 217 75.6
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.1e-92 344.0 258 69.0
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 4.8e-91 338.6 224 71.4
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 8.2e-91 337.8 227 70.0
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.1e-90 337.4 254 68.1
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.1e-90 337.4 223 73.1
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 4.1e-90 335.5 273 61.9
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 5.3e-90 335.1 256 67.6
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.5e-89 333.6 283 61.8
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 2.6e-89 332.8 221 70.1
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 3.4e-89 332.4 287 59.6
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.4e-89 332.4 249 67.5
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.0e-88 330.9 253 67.6
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.1e-87 327.4 252 65.9
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 2.5e-87 326.2 220 70.0
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.2e-87 325.5 252 65.5
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 4.6e-86 322.0 346 52.9
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 6.7e-85 318.2 330 55.2
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.5e-84 317.0 223 68.2
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.8e-83 312.8 339 53.1
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.7e-83 312.4 319 55.8
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.5e-81 307.0 234 63.2
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.4e-81 305.8 189 77.8
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-80 303.9 248 62.1
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.3e-80 303.9 248 62.1
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.2e-80 303.1 269 58.0
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.9e-80 302.8 248 62.1
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.9e-80 302.8 248 62.1
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.5e-79 299.7 231 64.5
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 7.2e-79 298.1 231 64.1
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.2e-78 297.4 282 53.5
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.7e-78 296.2 255 62.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 7.9e-78 294.7 264 59.1
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 6.7e-77 291.6 188 76.1
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.1e-74 284.3 169 79.3
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.4e-71 273.9 219 64.4
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 4.7e-70 268.9 174 73.0
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 6.1e-70 268.5 166 77.1
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 3.9e-69 265.8 252 58.7
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.8e-64 249.2 160 72.5
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 9.1e-58 228.0 222 49.1
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.2e-57 227.6 143 75.5
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 7.7e-57 224.9 210 51.0
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.8e-56 222.6 133 78.2
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 6.1e-54 215.3 208 47.6
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 2.6e-52 209.9 212 45.8
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.8e-51 206.5 245 51.0
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 7.2e-47 191.8 137 67.9
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.4e-45 187.6 198 47.5
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 3.7e-43 179.5 154 61.0
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 6.3e-43 178.7 105 77.1
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.3e-31 139.4 137 58.4
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.6e-31 139.0 119 63.9
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 8.0e-30 135.2 189 37.6
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.1e-29 134.8 133 54.9
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 1.3e-24 117.9 189 36.5
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 3.0e-24 116.7 80 68.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.5e-23 113.6 80 67.5
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.1e-21 108.2 82 59.8
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-18 98.2 95 53.7
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 2.4e-18 97.1 69 65.2
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.6e-17 92.8 83 53.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 4.0e-13 79.7 47 76.6
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.1e-09 67.4 40 75.0
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.0e-08 63.5 49 63.3
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 8.7e-08 62.0 34 85.3
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 4.3e-07 59.7 52 51.9
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.1e-06 57.4 57 52.6


User provided reference genes

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