Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 3.0e-162 575.1 281 100.0
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 1.2e-123 446.8 256 85.5
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 4.6e-123 444.9 220 98.6
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 8.4e-117 424.1 257 79.8
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 6.3e-112 407.9 256 75.0
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 1.7e-96 356.7 248 67.3
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 1.4e-95 353.6 256 67.6
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 1.5e-94 350.1 260 66.9
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 4.5e-94 348.6 256 66.0
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 9.4e-92 340.9 258 67.4
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 2.7e-91 339.3 256 64.8
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 1.0e-90 337.4 249 65.1
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 1.4e-90 337.0 256 61.7
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 1.8e-90 336.7 271 63.5
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 2.3e-90 336.3 256 63.7
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 3.0e-90 335.9 256 63.7
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 5.2e-90 335.1 256 61.3
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 5.2e-90 335.1 258 63.6
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 1.1e-89 334.0 255 61.2
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 1.5e-89 333.6 250 63.2
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 2.6e-89 332.8 256 64.8
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 3.3e-89 332.4 256 63.3
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 3.3e-89 332.4 257 65.8
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 1.3e-88 330.5 250 62.0
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 1.3e-88 330.5 257 63.8
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 1.7e-88 330.1 245 65.3
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 2.2e-88 329.7 258 64.7
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 2.2e-88 329.7 248 63.3
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 2.8e-88 329.3 256 66.4
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 4.8e-88 328.6 256 63.7
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 6.3e-88 328.2 259 62.2
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 1.4e-87 327.0 250 61.2
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 1.8e-87 326.6 248 61.7
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 2.4e-87 326.2 256 62.9
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 4.1e-87 325.5 256 62.5
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 4.1e-87 325.5 260 61.2
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 4.1e-87 325.5 260 61.2
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 5.3e-87 325.1 256 62.9
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 7.0e-87 324.7 248 62.1
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 1.6e-86 323.6 257 62.6
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 1.6e-86 323.6 248 61.7
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 1.6e-86 323.6 250 61.6
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 1.6e-86 323.6 257 63.0
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 1.6e-86 323.6 258 61.2
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 2.0e-86 323.2 250 64.8
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 2.6e-86 322.8 256 62.5
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.9e-86 321.6 246 61.8
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 7.7e-86 321.2 249 61.0
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 1.3e-85 320.5 250 64.8
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.3e-85 320.5 249 61.4
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 2.2e-85 319.7 256 60.2
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 8.5e-85 317.8 242 63.2
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 1.9e-84 316.6 250 61.6
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 4.2e-84 315.5 244 60.7
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 4.2e-84 315.5 253 61.7
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 4.2e-84 315.5 257 61.5
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 5.5e-84 315.1 244 61.1
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 5.5e-84 315.1 250 61.6
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 7.2e-84 314.7 243 63.8
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 7.2e-84 314.7 247 61.5
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 9.4e-84 314.3 249 60.6
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 1.6e-83 313.5 244 60.7
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.6e-83 313.5 243 64.2
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.6e-83 313.5 244 60.2
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 1.6e-83 313.5 248 62.1
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 2.7e-83 312.8 247 61.5
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 3.6e-83 312.4 256 60.2
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 4.7e-83 312.0 242 60.7
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 4.7e-83 312.0 276 55.1
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 6.1e-83 311.6 252 59.9
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 8.0e-83 311.2 244 60.2
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 8.0e-83 311.2 241 61.0
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 8.0e-83 311.2 241 61.0
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 8.0e-83 311.2 241 61.0
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 8.0e-83 311.2 228 64.0
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 1.0e-82 310.8 258 59.3
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 1.4e-82 310.5 252 61.1
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 2.3e-82 309.7 247 59.9
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 3.0e-82 309.3 244 59.8
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 4.0e-82 308.9 256 59.4
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 4.0e-82 308.9 251 59.8
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 5.2e-82 308.5 239 61.1
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 5.2e-82 308.5 239 61.1
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 6.7e-82 308.1 247 59.5
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 8.8e-82 307.8 239 61.5
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 1.2e-81 307.4 248 58.5
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 2.0e-81 306.6 256 57.8
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 2.6e-81 306.2 265 59.2
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 4.4e-81 305.4 280 53.6
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 7.5e-81 304.7 194 73.7
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 9.7e-81 304.3 256 60.9
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.2e-80 303.1 250 58.8
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.8e-80 302.8 250 58.8
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 2.8e-80 302.8 305 50.2
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 3.1e-79 299.3 228 63.2
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 7.0e-79 298.1 194 70.6
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 2.7e-78 296.2 253 56.1
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 5.9e-78 295.0 223 62.8
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 5.9e-78 295.0 247 57.9
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.5e-76 288.5 249 56.6
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 1.6e-75 287.0 190 69.5
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 8.0e-75 284.6 194 70.1
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 3.0e-74 282.7 252 56.3
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 6.8e-74 281.6 255 55.3
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 1.5e-73 280.4 256 56.2
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 3.4e-73 279.3 240 57.5
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 3.4e-73 279.3 240 57.5
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 3.4e-73 279.3 253 55.3
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 4.4e-73 278.9 222 60.8
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 7.5e-73 278.1 248 55.6
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 4.1e-71 272.3 252 50.8
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 2.0e-70 270.0 248 54.4
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 7.7e-70 268.1 251 55.0
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 1.3e-69 267.3 213 59.6
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 1.7e-69 266.9 216 58.8
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 5.5e-68 261.9 233 55.8
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 6.1e-67 258.5 228 53.9
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 8.0e-67 258.1 235 52.8
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.0e-66 257.7 232 53.4
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 3.4e-65 252.7 186 65.6
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 4.4e-65 252.3 186 64.5
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 8.3e-64 248.1 182 64.3
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 4.1e-63 245.7 244 50.4
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 2.0e-62 243.4 185 64.3
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.1e-60 237.7 273 48.4
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.6e-59 233.8 211 51.7
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 3.7e-56 222.6 211 50.7
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 4.1e-55 219.2 194 54.1
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 1.3e-53 214.2 172 62.8
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 3.1e-50 203.0 168 56.0
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 3.4e-49 199.5 173 57.8
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 4.1e-47 192.6 151 58.3
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 9.2e-47 191.4 228 46.9
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 1.2e-46 191.0 217 49.3
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 4.3e-44 182.6 164 54.9
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 5.2e-42 175.6 249 40.6
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 2.6e-41 173.3 256 39.1
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 7.5e-41 171.8 172 50.6
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 1.4e-39 167.5 139 57.6
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 4.6e-38 162.5 182 44.0
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.2e-35 154.5 149 55.7
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 1.2e-27 127.9 127 50.4
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 5.2e-26 122.5 112 52.7
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 1.9e-23 114.0 85 61.2
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 3.5e-22 109.8 117 48.7
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 4.3e-20 102.8 183 38.8
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 2.8e-19 100.1 75 62.7
PRCOL_00005145 Prasinoderma coloniale HOM05D004822 ORTHO05D005632 6.9e-18 95.5 261 27.2
vmacro22183 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 2.9e-16 90.1 77 58.4
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 6.4e-16 89.0 77 57.1
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 1.3e-13 81.3 56 62.5
MCO05G124 Micromonas commoda HOM05D004822 ORTHO05D005632 9.0e-10 68.6 204 27.0
PRCOL_00002723 Prasinoderma coloniale HOM05D004398 ORTHO05D005268 3.2e-07 60.1 157 24.8
Os01g0610400 Oryza sativa ssp. japonica HOM05D004398 ORTHO05D005268 4.2e-07 59.7 146 28.1
SEGI_22963 Sequoiadendron giganteum HOM05D004398 ORTHO05D005268 7.1e-07 58.9 158 24.7
ATR0618G325 Amborella trichopoda HOM05D004398 ORTHO05D005268 9.3e-07 58.5 157 24.8
SMO356G0009 Selaginella moellendorffii HOM05D004398 ORTHO05D005268 2.7e-06 57.0 145 26.9
AL6G21990 Arabidopsis lyrata HOM05D004398 ORTHO05D005268 3.5e-06 56.6 167 25.1
Carub.0006s0980 Capsella rubella HOM05D004398 ORTHO05D005268 3.5e-06 56.6 167 25.1
Sed0003647 Sechium edule HOM05D004398 ORTHO05D005268 3.5e-06 56.6 144 26.4
CANSAT54G1009 Cannabis sativa HOM05D004398 ORTHO05D005268 4.6e-06 56.2 144 27.1
CANSAT54G1633 Cannabis sativa HOM05D004398 ORTHO05D005268 4.6e-06 56.2 144 27.1
CANSAT54G2276 Cannabis sativa HOM05D004398 ORTHO05D005268 4.6e-06 56.2 144 27.1
Peaxi162Scf00251g01121 Petunia axillaris HOM05D004398 ORTHO05D005268 4.6e-06 56.2 166 26.5
Medtr5g098790 Medicago truncatula HOM05D004398 ORTHO05D005268 6.0e-06 55.8 167 24.6
Sed0007380 Sechium edule HOM05D004398 ORTHO05D005268 6.0e-06 55.8 144 27.8
Thhalv10014874m.g Eutrema salsugineum HOM05D004398 ORTHO05D005268 7.9e-06 55.5 167 25.1
Mapoly0023s0029 Marchantia polymorpha HOM05D004398 ORTHO05D005268 7.9e-06 55.5 158 23.4
Pp3c13_8050 Physcomitrium patens HOM05D004398 ORTHO05D005268 7.9e-06 55.5 157 21.0
Solyc08g067440.2 Solanum lycopersicum HOM05D004398 ORTHO05D005268 7.9e-06 55.5 145 26.2


User provided reference genes

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