Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002057 Chenopodium quinoa HOM05D006359 ORTHO05D007871 5.3e-86 320.9 148 100.0
AUR62028171 Chenopodium quinoa HOM05D006359 ORTHO05D007871 2.7e-82 308.5 157 92.4
EL10Ac3g05084 Beta vulgaris HOM05D006359 ORTHO05D007871 3.6e-74 281.6 157 84.1
Hund09785 Selenicereus undatus HOM05D006359 ORTHO05D007871 1.0e-73 280.0 148 83.1
Nitab4.5_0011930g0020 Nicotiana tabacum HOM05D006359 ORTHO05D007871 5.0e-68 261.2 147 78.2
CANSAT56G0993 Cannabis sativa HOM05D006359 ORTHO05D007871 6.5e-68 260.8 155 74.8
CiPaw.06G019000 Carya illinoinensis HOM05D006359 ORTHO05D007871 6.5e-68 260.8 155 75.5
FAN01G1102 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.1e-67 260.0 153 75.8
FAN03G2552 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.1e-67 260.0 153 75.8
PGR042G0220 Punica granatum HOM05D006359 ORTHO05D007871 1.4e-67 259.6 156 75.6
FvH4_7g33890 Fragaria vesca HOM05D006359 ORTHO05D007871 1.9e-67 259.2 155 74.8
Lsat_1_v5_gn_3_105561 Lactuca sativa HOM05D006359 ORTHO05D007871 5.5e-67 257.7 157 75.2
Sopen03g027690 Solanum pennellii HOM05D006359 ORTHO05D007871 5.5e-67 257.7 158 72.8
Peaxi162Scf00745g00854 Petunia axillaris HOM05D006359 ORTHO05D007871 9.4e-67 256.9 147 76.2
Cpa.g.sc39.69 Carica papaya HOM05D006359 ORTHO05D007871 4.7e-66 254.6 156 72.4
MD07G1308200 Malus domestica HOM05D006359 ORTHO05D007871 4.7e-66 254.6 155 71.6
SalBow4G0660 Salvia bowleyana HOM05D006359 ORTHO05D007871 4.7e-66 254.6 156 73.1
SalBow4G2166 Salvia bowleyana HOM05D006359 ORTHO05D007871 4.7e-66 254.6 156 73.1
Rhsim09G0212500 Rhododendron simsii HOM05D006359 ORTHO05D007871 8.0e-66 253.8 145 74.5
CsaV3_5G005640 Cucumis sativus L. HOM05D006359 ORTHO05D007871 1.0e-65 253.4 159 73.0
PGSC0003DMG402000567 Solanum tuberosum HOM05D006359 ORTHO05D007871 1.0e-65 253.4 156 71.8
SGA_v2.0_scaffold44G16885 Striga asiatica HOM05D006359 ORTHO05D007871 1.0e-65 253.4 156 73.1
MELO3C005389.2 Cucumis melo HOM05D006359 ORTHO05D007871 1.4e-65 253.1 159 73.0
Migut.F00100 Erythranthe guttata HOM05D006359 ORTHO05D007871 1.4e-65 253.1 156 72.4
Sed0025211 Sechium edule HOM05D006359 ORTHO05D007871 1.4e-65 253.1 159 73.0
CAN.G303.77 Capsicum annuum HOM05D006359 ORTHO05D007871 1.8e-65 252.7 156 73.1
RcHm_v2.0_Chr1g0384091 Rosa chinensis HOM05D006359 ORTHO05D007871 2.3e-65 252.3 155 72.3
Cc02_g00330 Coffea canephora HOM05D006359 ORTHO05D007871 3.0e-65 251.9 158 71.5
Cfa015873 Carpinus fangiana HOM05D006359 ORTHO05D007871 3.9e-65 251.5 156 71.2
SGA_v2.0_scaffold18G08507 Striga asiatica HOM05D006359 ORTHO05D007871 5.2e-65 251.1 158 71.5
Prupe.2G325400 Prunus persica HOM05D006359 ORTHO05D007871 6.7e-65 250.8 155 71.6
TAR375G0743 Trochodendron aralioides HOM05D006359 ORTHO05D007871 8.8e-65 250.4 158 70.3
Atru.chr12.1978 Acer truncatum HOM05D006359 ORTHO05D007871 1.1e-64 250.0 156 71.2
Potri.019G051400 Populus trichocarpa HOM05D006359 ORTHO05D007871 1.1e-64 250.0 154 70.8
MD01G1235400 Malus domestica HOM05D006359 ORTHO05D007871 1.5e-64 249.6 155 71.0
Sed0002409 Sechium edule HOM05D006359 ORTHO05D007871 2.6e-64 248.8 159 70.4
TWI74G0194 Tripterygium wilfordii HOM05D006359 ORTHO05D007871 2.6e-64 248.8 153 71.2
FAN03G1870 Fragaria x ananassa HOM05D006359 ORTHO05D007871 4.4e-64 248.1 155 71.6
HanXRQChr12g0381881 Helianthus annuus HOM05D006359 ORTHO05D007871 4.4e-64 248.1 157 71.3
CSS0011317 Camellia sinensis var. sinensis HOM05D006359 ORTHO05D007871 7.4e-64 247.3 156 70.5
Sabra19G0057200 Salix brachista HOM05D006359 ORTHO05D007871 7.4e-64 247.3 155 68.4
ATR0829G118 Amborella trichopoda HOM05D006359 ORTHO05D007871 9.7e-64 246.9 158 70.9
Actinidia18703 Actinidia chinensis HOM05D006359 ORTHO05D007871 1.7e-63 246.1 154 69.5
ECA246G3947 Erigeron canadensis HOM05D006359 ORTHO05D007871 2.2e-63 245.7 156 69.9
unitig_0.g2431 Utricularia gibba HOM05D001194 ORTHO05D007871 2.2e-63 245.7 158 70.3
Manes.08G162700 Manihot esculenta HOM05D006359 ORTHO05D007871 2.8e-63 245.4 156 69.9
PSO782G4768 Papaver somniferum HOM05D006359 ORTHO05D007871 6.3e-63 244.2 156 68.6
PSO063G2711 Papaver somniferum HOM05D006359 ORTHO05D007871 1.1e-62 243.4 156 67.9
Ca_23151_v3 Cicer arietinum L. HOM05D006359 ORTHO05D007871 1.4e-62 243.0 153 70.6
Dinv29162 Davidia involucrata HOM05D006359 ORTHO05D007871 2.4e-62 242.3 148 73.0
Aqoxy3G02089 Aquilegia oxysepala HOM05D006359 ORTHO05D007871 1.6e-61 239.6 154 67.5
Phvul.002G039500 Phaseolus vulgaris HOM05D006359 ORTHO05D007871 2.6e-61 238.8 153 68.6
Eucgr.K00090 Eucalyptus grandis HOM05D006359 ORTHO05D007871 3.5e-61 238.4 157 67.5
arahy.Tifrunner.gnm1.ann1.K5IGPH Arachis hypogaea HOM05D006359 ORTHO05D007871 7.7e-61 237.3 152 68.4
arahy.Tifrunner.gnm1.ann1.N39QDT Arachis hypogaea HOM05D006359 ORTHO05D007871 1.0e-60 236.9 152 67.8
THA.LOC104820881 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 1.3e-60 236.5 156 67.9
COL.COLO4_25307 Corchorus olitorius HOM05D006359 ORTHO05D007871 2.2e-60 235.7 155 67.7
Glyma.01G228400 Glycine max HOM05D006359 ORTHO05D007871 2.2e-60 235.7 153 66.7
AT3G03100 Arabidopsis thaliana HOM05D006359 ORTHO05D007871 3.8e-60 235.0 155 67.1
Glyma.11G011200 Glycine max HOM05D006359 ORTHO05D007871 3.8e-60 235.0 153 67.3
Gohir.D09G101400 Gossypium hirsutum HOM05D006359 ORTHO05D007871 8.5e-60 233.8 155 66.5
Gorai.006G118800 Gossypium raimondii HOM05D006359 ORTHO05D007871 8.5e-60 233.8 155 66.5
THA.LOC104827217 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 8.5e-60 233.8 156 66.7
CARHR077120 Cardamine hirsuta HOM05D006359 ORTHO05D007871 1.1e-59 233.4 155 66.5
Gohir.A09G104700 Gossypium hirsutum HOM05D006359 ORTHO05D007871 1.1e-59 233.4 155 66.5
AL3G12700 Arabidopsis lyrata HOM05D006359 ORTHO05D007871 1.9e-59 232.6 155 66.5
Thecc.09G264700 Theobroma cacao HOM05D006359 ORTHO05D007871 1.9e-59 232.6 156 66.7
Thhalv10021682m.g Eutrema salsugineum HOM05D006359 ORTHO05D007871 2.5e-59 232.3 155 67.1
Aa31LG5G13580 Aethionema arabicum HOM05D006359 ORTHO05D007871 3.2e-59 231.9 155 66.5
Carub.0003s0225 Capsella rubella HOM05D006359 ORTHO05D007871 3.2e-59 231.9 155 65.8
Sp3g02140 Schrenkiella parvula HOM05D006359 ORTHO05D007871 3.2e-59 231.9 155 66.5
Duzib168G1989 Durio zibethinus HOM05D006359 ORTHO05D007871 5.5e-59 231.1 155 66.5
Os10g0579300 Oryza sativa ssp. japonica HOM05D006359 ORTHO05D007871 5.5e-59 231.1 156 67.3
TPR.G17376 Trifolium pratense HOM05D006359 ORTHO05D007871 5.5e-59 231.1 153 67.3
TPR.G779 Trifolium pratense HOM05D006359 ORTHO05D007871 5.5e-59 231.1 153 67.3
BolC1t05848H Brassica oleracea HOM05D006359 ORTHO05D007871 1.6e-58 229.6 155 65.8
BraA01t04593Z Brassica rapa HOM05D006359 ORTHO05D007871 1.6e-58 229.6 155 65.8
Lj3A888T26 Lonicera japonica HOM05D006359 ORTHO05D007871 1.6e-58 229.6 118 83.9
Medtr8g009960 Medicago truncatula HOM05D006359 ORTHO05D007871 1.6e-58 229.6 152 67.1
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.1e-58 229.2 148 68.9
Ciclev10022653m.g Citrus clementina HOM05D006359 ORTHO05D007871 2.1e-58 229.2 151 64.9
QL09p024508 Quercus lobata HOM05D006359 ORTHO05D007871 2.1e-58 229.2 154 66.2
GSVIVG01024414001 Vitis vinifera HOM05D006359 ORTHO05D007871 2.7e-58 228.8 154 65.6
Zm00001eb025210 Zea mays HOM05D006359 ORTHO05D007871 2.7e-58 228.8 156 65.4
Lj3g0004693 Lotus japonicus HOM05D006359 ORTHO05D007871 1.0e-57 226.9 153 64.7
arahy.Tifrunner.gnm1.ann1.0WZ6H1 Arachis hypogaea HOM05D006359 ORTHO05D007871 1.4e-57 226.5 164 61.0
Duzib150G0394 Durio zibethinus HOM05D006359 ORTHO05D007871 2.3e-57 225.7 155 64.5
C05p63700 Brassica napus HOM05D006359 ORTHO05D007871 3.0e-57 225.3 155 64.5
BolC5t35039H Brassica oleracea HOM05D006359 ORTHO05D007871 3.0e-57 225.3 155 64.5
BraSC90t46703Z Brassica rapa HOM05D006359 ORTHO05D007871 3.0e-57 225.3 155 64.5
Lalb_Chr05g0211271 Lupinus albus HOM05D006359 ORTHO05D007871 4.0e-57 224.9 153 64.7
A05p44080 Brassica napus HOM05D006359 ORTHO05D007871 6.7e-57 224.2 155 63.9
Nitab4.5_0000021g0410 Nicotiana tabacum HOM05D006359 ORTHO05D007871 1.3e-55 219.9 248 46.4
Sc13g0010840 Simmondsia chinensis HOM05D006359 ORTHO05D007871 2.8e-55 218.8 120 79.2
Zm00001eb224990 Zea mays HOM05D006359 ORTHO05D007871 3.7e-55 218.4 149 65.8
vmacro10188 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 7.0e-54 214.2 116 78.4
VMungo1215G3178 Vigna mungo HOM05D006359 ORTHO05D007871 5.9e-53 211.1 125 72.0
TPR.G4015 Trifolium pratense HOM05D006359 ORTHO05D007871 7.2e-51 204.1 150 61.3
CDE11G0363 Ceratophyllum demersum HOM05D006359 ORTHO05D007871 1.8e-49 199.5 108 77.8
Haze_00616 Corylus avellana HOM05D006359 ORTHO05D007871 4.0e-49 198.4 156 60.3
ClCG01G005390 Citrullus lanatus HOM05D006359 ORTHO05D007871 7.5e-48 194.1 124 72.6
FAN02G0767 Fragaria x ananassa HOM05D006359 ORTHO05D007871 3.1e-46 188.7 123 69.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.0e-45 186.0 118 71.2
arahy.Tifrunner.gnm1.ann1.PN0BWC Arachis hypogaea HOM05D006359 ORTHO05D007871 3.5e-45 185.3 122 67.2
Mapoly0001s0046 Marchantia polymorpha HOM05D006359 ORTHO05D007871 4.2e-43 178.3 152 54.6
FAN05G5659 Fragaria x ananassa HOM05D006359 ORTHO05D007871 8.0e-42 174.1 111 72.1
Pp3c16_5910 Physcomitrium patens HOM05D006359 ORTHO05D007871 1.4e-41 173.3 144 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5152 Anthoceros agrestis HOM05D006359 ORTHO05D007871 3.0e-41 172.2 146 53.4
BNapus_Darmor_BZH_scaffold_129p00020 Brassica napus HOM05D006359 ORTHO05D007871 2.0e-40 169.5 132 59.1
Gorai.009G080000 Gossypium raimondii HOM05D006359 ORTHO05D007871 5.7e-40 167.9 154 53.2
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.2e-39 166.0 117 65.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.1e-38 162.2 87 79.3
BcaB04g21383 Brassica carinata HOM05D006359 ORTHO05D007871 6.6e-36 154.5 110 63.6
Nn1g01943 Nelumbo nucifera HOM05D006359 ORTHO05D007871 2.5e-35 152.5 110 61.8
CBR_g23185 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-35 152.1 145 49.7
SMO331G0004 Selaginella moellendorffii HOM05D006359 ORTHO05D007871 5.6e-35 151.4 104 59.6
Psat4g215600 Pisum sativum HOM05D006359 ORTHO05D007871 7.3e-35 151.0 106 65.1
FAN10G1928 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.2e-29 133.7 67 83.6
Gohir.A05G075800 Gossypium hirsutum HOM05D006359 ORTHO05D007871 2.0e-29 132.9 153 45.8
Hma1.2p1_0758F.1_g213680 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 3.5e-29 132.1 83 71.1
Hma1.2p1_0758F.1_g213690 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 1.3e-28 130.2 82 70.7
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.1e-19 100.5 58 69.0
Cre11.g467767 Chlamydomonas reinhardtii HOM05D006359 ORTHO05D007871 7.3e-19 97.8 105 41.0
MCO08G302 Micromonas commoda HOM05D006359 ORTHO05D007871 1.2e-18 97.1 111 44.1
vmacro23522 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 9.9e-16 87.4 46 76.1
Actinidia33791 Actinidia chinensis HOM05D006359 ORTHO05D007871 9.2e-14 80.9 71 54.9
Haze_26508 Corylus avellana HOM05D006359 ORTHO05D007871 1.7e-12 76.6 146 37.7
PRCOL_00004481 Prasinoderma coloniale HOM05D006359 ORTHO05D007871 1.2e-08 63.9 124 36.3


User provided reference genes

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