Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 0.0e+00 1859.7 941 100.0
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 0.0e+00 1776.1 938 96.3
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 0.0e+00 1301.6 945 72.5
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 0.0e+00 1208.7 946 67.2
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.9e-294 1015.4 1016 56.1
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.4e-248 863.6 945 51.5
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 3.4e-210 736.1 957 45.8
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.7e-207 726.5 951 46.1
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 4.5e-207 725.7 954 45.7
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.5e-202 710.7 942 44.9
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 4.4e-202 709.1 956 44.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 9.8e-202 708.0 959 45.0
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 4.5e-199 699.1 950 44.4
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 6.8e-195 685.3 959 43.2
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 2.6e-194 683.3 953 43.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.4e-194 682.9 952 44.1
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 5.8e-194 682.2 958 43.3
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 5.4e-192 675.6 930 43.9
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.3e-190 670.2 950 43.3
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.1e-189 667.9 956 42.8
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.5e-189 667.5 892 44.3
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.3e-189 665.2 950 43.1
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 3.6e-188 662.9 955 42.9
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 4.7e-188 662.5 951 43.0
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.0e-188 661.8 950 43.1
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 3.4e-186 656.4 954 42.8
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.7e-185 654.1 950 42.6
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 2.9e-185 653.3 955 42.4
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.2e-183 647.9 951 42.5
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.5e-183 646.4 951 42.5
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.3e-182 643.7 954 42.2
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 6.6e-182 642.1 954 42.3
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 1.5e-181 641.0 951 40.0
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 2.5e-181 640.2 936 42.4
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.6e-180 637.5 961 40.7
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 2.8e-180 636.7 951 41.6
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 2.4e-176 623.6 959 42.0
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 3.5e-175 619.8 969 42.6
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.9e-174 616.3 953 42.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 5.1e-174 615.9 962 40.5
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 3.3e-173 613.2 959 40.8
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 4.3e-173 612.8 963 40.5
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 3.6e-172 609.8 946 41.8
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.8e-171 607.4 890 43.0
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.4e-171 607.1 967 41.5
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.5e-170 604.4 956 39.7
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.5e-170 604.4 963 41.3
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 2.6e-170 603.6 960 40.8
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 8.4e-169 598.6 955 41.4
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-168 598.2 957 39.7
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.4e-168 597.8 901 41.6
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 1.9e-168 597.4 951 40.4
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 3.2e-168 596.7 949 41.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 5.4e-168 595.9 955 40.4
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 5.4e-168 595.9 953 40.1
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.7e-167 593.6 962 40.5
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.7e-167 593.6 962 40.5
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 4.6e-167 592.8 961 41.0
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.3e-166 590.5 959 40.3
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 6.6e-166 589.0 1035 38.2
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.5e-165 587.0 924 40.9
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 5.6e-165 585.9 953 38.6
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.3e-164 584.7 661 49.8
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.6e-164 584.3 966 40.3
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 3.6e-164 583.2 925 41.4
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 3.1e-163 580.1 954 38.4
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.5e-162 577.8 927 38.7
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.7e-161 574.3 954 39.6
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.1e-160 571.6 964 39.5
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.9e-160 570.9 930 39.1
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 4.6e-159 566.2 964 39.6
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.0e-158 565.1 965 39.5
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 6.6e-158 562.4 937 39.5
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.4e-155 554.7 934 39.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 1.5e-154 551.2 966 38.9
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 3.4e-154 550.1 976 38.3
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 7.1e-152 542.3 952 37.5
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.2e-151 541.6 923 40.4
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 3.5e-151 540.0 955 37.7
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.5e-151 540.0 952 37.4
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 3.0e-150 537.0 932 38.0
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 5.1e-150 536.2 926 36.6
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 6.7e-150 535.8 954 39.0
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.0e-145 521.9 1017 36.8
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.2e-144 516.9 905 38.0
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.6e-143 514.6 960 38.1
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 4.6e-143 513.1 961 38.2
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 9.0e-139 498.8 837 40.0
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.0e-134 485.3 953 35.8
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.3e-134 485.0 926 36.8
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.8e-134 484.6 649 45.0
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 5.1e-134 483.0 966 37.3
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 6.9e-131 472.6 874 37.1
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.0e-129 468.8 894 35.9
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.1e-127 461.1 958 35.4
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.3e-124 451.8 892 35.3
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 2.0e-122 444.5 921 35.5
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.0e-121 442.2 963 35.0
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.7e-121 441.4 971 35.2
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.4e-120 438.3 945 35.2
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 2.1e-119 434.5 979 34.9
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 7.9e-119 432.6 962 35.0
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 7.9e-119 432.6 962 35.0
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 2.3e-118 431.0 971 35.1
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 6.7e-118 429.5 965 34.9
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.8e-118 429.1 947 35.0
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 2.6e-117 427.6 973 34.4
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 2.2e-116 424.5 967 34.5
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 2.2e-116 424.5 967 34.5
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 3.7e-116 423.7 941 34.4
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 6.3e-116 422.9 974 34.7
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 1.5e-114 418.3 949 35.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 3.5e-114 417.2 968 34.7
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-113 415.2 749 37.8
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 8.0e-111 406.0 932 33.3
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.5e-109 401.7 977 34.3
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 2.1e-103 381.3 973 33.3
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 6.1e-103 379.8 898 34.4
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 9.8e-101 372.5 905 32.4
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.0e-94 350.9 764 34.6
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 5.2e-94 350.1 983 32.1
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.9e-92 343.6 738 34.7
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.0e-89 335.9 1002 31.5
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.7e-79 300.4 956 29.0
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.3e-76 292.4 987 29.4
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 9.5e-72 276.2 894 29.6
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.8e-70 271.9 951 29.8
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.7e-60 238.8 991 27.3
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 3.1e-54 218.0 592 31.9
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 3.1e-54 218.0 426 34.0
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.4e-40 170.2 184 48.9
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 9.6e-40 169.9 944 26.9
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 3.6e-39 167.9 238 45.4
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 5.3e-38 164.1 213 42.7
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.6e-37 161.8 390 34.4
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 6.9e-30 137.1 1202 22.6
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 4.9e-28 131.0 210 41.0
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.2e-26 126.3 387 30.0
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 4.6e-26 124.4 225 35.1
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 3.1e-22 111.7 468 26.7
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 3.8e-20 104.8 1146 22.0
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 6.5e-20 104.0 1215 21.5
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.2e-19 101.3 417 28.3
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.3e-17 96.3 592 23.8
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 2.5e-16 92.0 154 39.6
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 9.7e-16 90.1 141 42.6
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.6e-13 82.0 618 22.7
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 3.4e-13 81.6 154 37.0
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 1.1e-11 76.6 227 26.9
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 7.9e-10 70.5 182 28.0
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 6.7e-09 67.4 116 37.9
MSTRG.18369 Avicennia marina HOM05D002769 ORTHO05D003160 1.5e-08 66.2 1052 23.2
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 3.3e-08 65.1 976 21.2
Sopen06g035050 Solanum pennellii HOM05D002769 ORTHO05D003160 2.2e-07 62.4 1035 22.6
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 2.8e-07 62.0 1051 21.5
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 8.2e-07 60.5 939 22.0
HanXRQChr15g0470071 Helianthus annuus HOM05D002515 ORTHO05D002722 8.2e-07 60.5 241 26.6
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 1.1e-06 60.1 181 27.1
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 1.1e-06 60.1 977 20.9
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.1e-06 60.1 297 27.9
Cc06_g03130 Coffea canephora HOM05D002036 ORTHO05D001913 1.8e-06 59.3 233 27.5
HPP92_006594 Vanilla planifolia HOM05D002036 ORTHO05D001913 2.4e-06 58.9 307 25.1
QL07p046595 Quercus lobata HOM05D002036 ORTHO05D001913 3.1e-06 58.5 955 22.4
Nn1g08729 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.3e-06 57.8 42 64.3
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 6.9e-06 57.4 1056 20.8
Gohir.D01G208400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 9.1e-06 57.0 397 24.7
Gorai.002G253500 Gossypium raimondii HOM05D002036 ORTHO05D001913 9.1e-06 57.0 407 24.1
Solyc06g083660.4 Solanum lycopersicum HOM05D002769 ORTHO05D003160 9.1e-06 57.0 964 22.3


User provided reference genes

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