Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 0.0e+00 1199.1 664 100.0
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.8e-298 1028.9 662 89.4
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 2.5e-199 699.5 635 66.0
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.3e-168 597.4 624 61.7
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.6e-150 537.3 640 55.0
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.8e-141 507.3 653 51.6
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 9.5e-135 485.0 639 48.8
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.8e-133 480.7 653 48.7
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 3.5e-129 466.5 440 61.1
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 7.8e-129 465.3 667 47.4
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.0e-128 464.9 641 48.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-127 461.5 336 74.1
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.5e-127 461.1 665 45.4
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.5e-127 461.1 650 48.5
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.9e-127 460.7 659 46.6
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 2.5e-127 460.3 633 48.3
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 4.3e-127 459.5 634 48.7
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 7.3e-127 458.8 644 49.5
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 7.3e-127 458.8 664 47.4
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.6e-126 457.6 668 44.2
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 2.1e-126 457.2 450 60.7
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 3.6e-126 456.4 658 48.8
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 4.7e-126 456.1 629 48.3
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.4e-125 454.5 646 46.7
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.8e-125 454.1 628 45.9
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.3e-125 453.8 637 46.6
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 8.9e-125 451.8 654 45.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 8.9e-125 451.8 535 52.0
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 2.0e-124 450.7 628 45.7
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.0e-124 450.7 654 48.0
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 3.4e-124 449.9 375 65.1
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 3.4e-124 449.9 649 48.4
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 7.6e-124 448.7 414 60.1
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 9.9e-124 448.4 383 62.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 9.9e-124 448.4 646 48.5
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.7e-123 446.4 662 44.7
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.1e-122 444.9 662 44.7
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 5.4e-122 442.6 637 47.3
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.3e-120 438.0 632 44.8
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 3.9e-120 436.4 441 58.5
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 3.9e-120 436.4 645 46.8
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 5.1e-120 436.0 617 48.1
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.3e-119 433.3 674 46.3
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 5.6e-119 432.6 600 49.8
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 2.8e-118 430.3 343 67.9
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 8.1e-118 428.7 646 44.9
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.4e-117 427.9 423 55.8
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 2.4e-117 427.2 616 47.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.4e-117 427.2 658 44.4
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 2.6e-116 423.7 688 43.6
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.4e-114 417.2 644 44.6
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 5.4e-114 416.0 620 46.0
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 7.8e-113 412.1 598 45.2
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.0e-112 411.8 616 44.2
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.3e-112 410.6 630 43.7
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 3.0e-112 410.2 615 44.4
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 5.6e-111 406.0 657 42.6
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 7.3e-111 405.6 640 42.8
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.4e-109 401.4 637 44.9
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.4e-109 401.4 641 45.4
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.0e-109 399.8 647 44.5
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.5e-108 397.9 653 45.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 2.9e-107 393.7 614 43.6
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 2.9e-107 393.7 622 44.7
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.1e-106 391.7 654 43.9
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.6e-105 387.9 610 42.3
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 2.1e-105 387.5 613 45.0
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 3.5e-105 386.7 623 43.0
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 4.6e-105 386.3 618 44.2
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 4.6e-105 386.3 649 43.3
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.0e-105 386.0 649 43.3
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 7.9e-105 385.6 593 44.9
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.3e-104 384.8 668 40.6
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 1.7e-104 384.4 619 43.6
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 1.7e-104 384.4 585 45.5
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 3.9e-104 383.3 718 40.8
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.5e-103 381.3 634 43.1
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 1.5e-103 381.3 739 40.2
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.9e-103 380.9 548 47.1
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 2.5e-103 380.6 385 57.9
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 3.3e-103 380.2 646 42.6
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.3e-103 380.2 448 53.3
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.3e-102 378.3 640 43.1
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 1.3e-102 378.3 686 42.4
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 4.8e-102 376.3 644 41.9
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.4e-101 374.8 649 41.8
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.3e-101 372.9 594 44.9
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.3e-101 372.9 594 44.9
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.4e-100 370.2 612 43.5
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 4.5e-100 369.8 639 42.4
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.2e-99 367.5 638 41.8
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.9e-99 366.3 330 60.9
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 7.9e-97 359.0 388 54.6
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 8.7e-96 355.5 618 42.6
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.9e-95 354.4 378 54.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 4.8e-94 349.7 384 53.9
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 2.4e-93 347.4 642 39.6
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 1.2e-92 345.1 640 42.2
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 2.5e-90 337.4 631 38.5
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.8e-86 323.2 412 47.3
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 1.0e-83 315.5 635 40.0
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 8.5e-83 312.4 539 42.1
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 1.1e-79 302.0 626 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 6.5e-59 233.0 321 44.9
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.4e-53 214.5 301 46.8
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.0e-51 209.1 439 33.7
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 6.5e-51 206.5 218 52.3
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.5e-50 205.3 447 35.3
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 7.2e-50 203.0 351 40.2
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 2.1e-49 201.4 313 40.3
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.8e-48 196.1 470 38.3
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 4.4e-47 193.7 287 42.5
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 8.3e-46 189.5 326 36.2
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.1e-42 179.1 125 69.6
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 3.2e-42 177.6 225 48.0
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 7.5e-39 166.4 440 35.7
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 1.7e-38 165.2 118 69.5
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.7e-38 165.2 118 70.3
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.9e-38 163.7 112 72.3
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 1.0e-35 156.0 193 46.1
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 2.8e-33 147.9 111 65.8
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 6.8e-32 143.3 112 65.2
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 3.4e-31 141.0 113 66.4
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.1e-29 136.0 419 32.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 4.3e-26 124.0 139 55.4
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.2e-25 122.5 93 68.8
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 3.6e-25 120.9 139 56.8
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 3.6e-25 120.9 138 57.2
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 8.0e-25 119.8 231 34.6
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 6.8e-24 116.7 89 61.8
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 4.4e-23 114.0 90 61.1
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.4e-23 114.0 112 48.2
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.4e-21 107.1 346 27.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 9.5e-18 96.3 338 31.1
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 6.2e-17 93.6 87 63.2
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.7e-12 78.2 57 66.7
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 8.1e-09 66.6 76 47.4
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 5.2e-08 63.9 48 66.7
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.7e-06 58.9 55 56.4
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 2.9e-06 58.2 44 61.4
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 6.4e-06 57.0 147 23.8


User provided reference genes

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