Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.1e-120 435.6 213 100.0
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.4e-108 396.4 213 91.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 2.6e-78 295.8 208 71.2
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 4.5e-70 268.5 220 67.7
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.3e-47 191.8 208 47.1
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 2.9e-45 186.0 209 46.4
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 2.9e-45 186.0 209 46.4
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.5e-44 183.7 209 45.9
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.5e-44 183.7 209 45.9
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 3.2e-44 182.6 209 45.5
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.2e-44 181.4 218 45.0
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 7.2e-44 181.4 209 45.5
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.1e-43 178.3 219 45.7
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.8e-42 176.8 210 46.7
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.3e-42 176.4 215 46.0
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 3.0e-42 176.0 209 44.0
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.8e-42 174.9 219 45.7
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.6e-41 172.9 214 46.7
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 4.4e-41 172.2 209 45.5
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 7.5e-41 171.4 215 46.0
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 7.5e-41 171.4 210 46.7
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 9.8e-41 171.0 211 43.6
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-40 170.6 209 45.0
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 6.3e-40 168.3 213 45.5
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 6.3e-40 168.3 212 46.7
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 8.3e-40 167.9 219 43.8
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 1.1e-39 167.5 210 44.3
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 3.1e-39 166.0 212 45.3
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.1e-39 165.6 212 43.4
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.5e-38 162.5 218 41.7
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 7.7e-38 161.4 204 42.6
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.3e-37 160.6 214 44.9
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.3e-37 160.6 211 44.1
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 8.5e-37 157.9 211 42.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 8.5e-37 157.9 216 43.1
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 8.5e-37 157.9 211 42.2
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.5e-36 157.1 212 42.9
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.5e-36 157.1 211 43.1
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.9e-36 156.8 212 42.9
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.5e-36 156.4 211 41.7
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 3.2e-36 156.0 211 42.7
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.2e-36 156.0 208 41.3
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 4.2e-36 155.6 204 42.6
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.2e-35 154.1 211 43.1
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.6e-35 153.7 214 39.3
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.7e-35 152.9 210 41.9
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 4.7e-35 152.1 217 42.9
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 4.7e-35 152.1 203 43.8
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 4.7e-35 152.1 211 43.1
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 6.1e-35 151.8 183 45.4
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 8.0e-35 151.4 211 42.7
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.8e-34 150.2 214 40.2
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.0e-34 149.1 215 40.5
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.0e-34 149.1 195 46.2
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.8e-34 148.3 211 42.7
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.8e-34 148.3 190 43.7
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.0e-33 146.7 186 46.8
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 3.4e-33 146.0 213 42.3
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.4e-33 146.0 190 45.3
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 9.8e-33 144.4 206 41.3
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 9.8e-33 144.4 210 42.4
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 2.4e-31 139.8 232 39.2
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 2.4e-31 139.8 210 38.6
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 5.4e-31 138.7 211 36.5
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 5.4e-31 138.7 211 36.5
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 5.4e-31 138.7 214 36.9
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.4e-31 138.7 193 40.9
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.2e-30 137.5 210 41.0
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 1.2e-30 137.5 202 39.1
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.0e-30 136.7 195 38.5
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 2.0e-30 136.7 214 37.9
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 2.7e-30 136.3 236 39.0
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 2.7e-30 136.3 236 39.0
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 4.5e-30 135.6 214 36.0
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.7e-30 134.8 210 39.5
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.7e-29 133.7 192 40.6
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.9e-29 132.9 211 38.9
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 6.6e-29 131.7 211 40.8
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 8.6e-29 131.3 207 38.2
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 8.6e-29 131.3 207 38.2
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.9e-28 130.2 201 36.8
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 3.3e-28 129.4 208 38.0
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 3.3e-28 129.4 210 38.6
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 3.3e-28 129.4 210 38.6
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.3e-28 129.4 207 37.2
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.3e-28 129.0 215 37.7
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 4.3e-28 129.0 215 37.7
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 7.3e-28 128.3 210 38.1
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 9.5e-28 127.9 212 35.8
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 9.5e-28 127.9 212 36.8
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.2e-27 127.5 221 36.7
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.2e-27 127.5 181 44.2
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.1e-27 126.7 207 37.2
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.7e-27 125.6 209 37.3
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 6.1e-27 125.2 210 36.2
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 6.1e-27 125.2 210 36.2
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 6.1e-27 125.2 210 36.2
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 8.0e-27 124.8 207 36.7
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.0e-26 124.4 208 38.0
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.4e-26 124.0 212 39.6
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.4e-26 124.0 211 36.0
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 2.3e-26 123.2 210 36.2
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.3e-26 123.2 213 36.2
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 2.3e-26 123.2 210 34.8
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.0e-26 122.5 191 43.5
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 4.0e-26 122.5 214 36.9
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 4.0e-26 122.5 193 36.8
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 5.2e-26 122.1 210 36.2
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 5.2e-26 122.1 194 38.1
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 5.2e-26 122.1 210 34.8
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 6.8e-26 121.7 211 35.5
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 8.9e-26 121.3 210 37.1
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.5e-25 120.6 209 34.9
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.5e-25 120.6 210 34.8
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-25 120.6 223 34.5
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 2.0e-25 120.2 210 34.3
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.6e-25 119.8 184 39.7
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 5.7e-25 118.6 191 37.2
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 5.7e-25 118.6 224 35.7
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 7.5e-25 118.2 212 36.8
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 7.5e-25 118.2 217 35.0
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 9.8e-25 117.9 210 34.8
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-24 117.5 213 34.3
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.7e-24 117.1 214 35.5
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.7e-24 117.1 210 35.7
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.2e-24 116.7 210 36.7
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 3.7e-24 115.9 192 37.0
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 3.7e-24 115.9 213 35.2
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 6.4e-24 115.2 214 32.7
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-23 114.4 212 33.5
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-23 114.4 210 35.2
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.8e-23 113.6 211 37.0
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.4e-23 113.2 214 33.6
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.2e-23 112.8 212 33.5
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 3.2e-23 112.8 214 33.6
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 7.0e-23 111.7 212 33.0
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 7.0e-23 111.7 212 33.5
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 7.0e-23 111.7 211 35.5
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 9.2e-23 111.3 212 33.0
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-22 110.9 185 37.8
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 2.0e-22 110.2 215 32.6
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 4.6e-22 109.0 107 51.4
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.0e-21 107.8 218 31.2
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.0e-21 107.8 213 31.9
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-21 107.5 215 31.2
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.7e-21 107.1 212 34.4
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-21 107.1 202 33.7
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 2.3e-21 106.7 215 32.1
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.0e-21 106.3 212 31.1
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 3.9e-21 105.9 217 30.9
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 5.0e-21 105.5 210 33.3
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 6.6e-21 105.1 230 32.6
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 6.6e-21 105.1 216 33.8
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-20 104.4 177 35.6
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.5e-20 104.0 213 33.8
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 1.5e-20 104.0 217 31.3
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.9e-20 103.6 213 32.9
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 1.9e-20 103.6 214 34.1
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-20 103.6 215 29.3
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 1.2e-19 100.9 214 31.8
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.6e-19 99.4 213 31.9
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.3e-18 96.7 215 29.3
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 3.1e-18 96.3 183 33.3
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.1e-18 96.3 150 36.7
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.1e-18 96.3 146 40.4
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.6e-17 93.2 111 41.4
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.5e-17 91.7 147 38.8
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 2.2e-16 90.1 214 32.7
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 3.7e-16 89.4 210 30.0
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 3.7e-16 89.4 91 50.5
Hund13629 Selenicereus undatus HOM05D003474 ORTHO05D003971 6.4e-16 88.6 106 48.1
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 3.2e-15 86.3 176 33.5
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.2e-15 86.3 148 35.1
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 4.1e-15 85.9 99 44.4
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 9.2e-15 84.7 149 36.9
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.2e-14 84.3 146 36.3
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.8e-14 81.6 146 36.3
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.0e-13 81.3 88 44.3
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.9e-13 79.3 148 33.8
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 6.6e-13 78.6 217 26.7
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-12 77.4 143 35.7
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 9.5e-12 74.7 138 36.2
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.6e-11 72.8 142 33.8
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-09 67.4 209 26.8
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 1.7e-08 63.9 119 31.1
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.0e-06 55.5 108 33.3


User provided reference genes

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