Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.5e-98 360.5 184 100.0
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.8e-96 355.9 184 99.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 2.7e-71 272.3 184 78.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.3e-69 265.0 185 76.2
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 5.6e-69 264.6 184 76.6
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 4.6e-63 245.0 178 74.2
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.0e-63 244.6 180 73.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.1e-60 236.1 180 71.1
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.4e-59 232.6 182 69.2
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 4.4e-58 228.4 179 68.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 9.9e-58 227.3 189 65.1
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 3.8e-57 225.3 180 68.3
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.8e-57 225.3 179 69.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.4e-56 223.4 177 68.4
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 4.2e-56 221.9 189 67.2
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.4e-56 221.5 176 68.8
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 7.1e-56 221.1 181 65.2
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 9.3e-56 220.7 173 69.4
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 9.3e-56 220.7 185 64.9
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 9.3e-56 220.7 185 64.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.2e-55 220.3 196 64.3
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.6e-55 219.9 177 65.0
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.7e-55 219.2 177 65.5
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 3.5e-55 218.8 178 65.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.5e-55 218.8 177 65.5
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 4.6e-55 218.4 180 66.7
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 7.9e-55 217.6 183 64.5
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.0e-54 217.2 181 64.6
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.0e-54 217.2 181 64.6
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-54 217.2 186 64.5
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.0e-54 217.2 177 65.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.3e-54 216.9 181 64.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-54 216.9 180 65.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.3e-54 216.1 185 63.8
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 3.0e-54 215.7 176 64.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-54 215.7 176 65.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 3.9e-54 215.3 178 69.1
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 5.1e-54 214.9 178 65.7
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.5e-53 213.4 189 66.7
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.9e-53 213.0 179 64.8
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.5e-53 212.6 184 62.5
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.3e-53 212.2 180 66.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 3.3e-53 212.2 195 62.1
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.3e-53 211.8 184 62.5
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.3e-53 211.8 184 62.5
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.3e-53 211.8 184 62.5
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 7.3e-53 211.1 181 63.0
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 7.3e-53 211.1 178 66.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 9.6e-53 210.7 176 63.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.6e-53 210.7 176 65.3
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.3e-52 210.3 190 61.6
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.1e-52 209.5 201 60.7
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 2.8e-52 209.1 156 73.7
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 4.8e-52 208.4 135 77.0
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.8e-52 208.4 186 62.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 6.2e-52 208.0 186 60.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 6.2e-52 208.0 186 60.2
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 8.1e-52 207.6 183 63.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.1e-51 207.2 176 64.2
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.4e-51 206.1 177 65.5
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 4.0e-51 205.3 187 63.1
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 4.0e-51 205.3 207 57.0
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 6.9e-51 204.5 178 62.4
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 6.9e-51 204.5 178 62.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 6.9e-51 204.5 178 62.4
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 6.9e-51 204.5 174 62.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 9.0e-51 204.1 192 59.4
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 9.0e-51 204.1 179 64.2
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.0e-50 203.0 177 62.7
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 3.4e-50 202.2 176 61.4
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.4e-50 202.2 187 61.5
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 4.5e-50 201.8 177 61.6
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.5e-50 201.8 155 69.0
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 7.6e-50 201.1 189 59.3
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.7e-49 199.9 178 62.4
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.7e-49 199.9 184 60.9
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.2e-49 199.5 184 60.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 2.2e-49 199.5 176 61.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 2.2e-49 199.5 176 60.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 62.4
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.8e-49 198.7 176 62.5
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.8e-49 198.7 177 59.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 6.4e-49 198.0 178 62.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 6.4e-49 198.0 178 62.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.1e-48 197.2 176 62.5
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.1e-48 197.2 149 69.1
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.1e-48 197.2 178 59.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.4e-48 196.8 176 61.9
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.9e-48 196.4 177 61.6
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.4e-48 196.1 130 73.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.4e-48 196.1 180 57.2
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 5.4e-48 194.9 184 58.2
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 7.1e-48 194.5 186 58.6
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 2.1e-47 193.0 184 59.2
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.6e-47 191.8 179 58.7
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.8e-46 189.9 176 58.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.8e-46 189.9 177 58.8
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.3e-46 189.5 184 56.5
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.3e-46 189.5 184 56.5
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-46 189.5 179 58.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.7e-46 188.0 179 57.5
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 8.7e-46 187.6 177 58.8
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.5e-45 186.0 179 57.0
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.5e-45 186.0 176 59.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 5.6e-45 184.9 161 65.2
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 8.1e-44 181.0 190 54.2
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.1e-43 180.6 177 57.6
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.8e-43 179.9 181 57.5
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.1e-43 179.1 120 73.3
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 6.9e-43 177.9 191 56.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.0e-42 176.4 173 57.8
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.9e-41 172.6 102 85.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.7e-39 166.0 164 57.3
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.1e-38 161.8 142 63.4
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.9e-37 159.8 179 53.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.9e-37 159.8 132 61.4
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 4.1e-35 152.1 91 81.3
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.6e-34 147.9 135 58.5
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.3e-33 147.1 139 59.0
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 6.5e-33 144.8 194 45.4
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.1e-32 144.1 101 70.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-32 144.1 123 60.2
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.4e-32 143.7 194 45.4
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.0e-30 136.0 116 66.4
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.1e-30 135.2 117 57.3
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 7.4e-29 131.3 108 61.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.8e-28 129.4 103 63.1
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 6.3e-28 128.3 103 62.1
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.4e-27 127.1 114 55.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.8e-27 126.7 119 56.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 5.3e-27 125.2 98 65.3
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.0e-25 120.9 111 58.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.3e-25 120.6 104 62.5
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 1.4e-24 117.1 104 56.7
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 7.2e-24 114.8 112 56.2
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 7.2e-24 114.8 122 54.1
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.1e-22 108.6 183 39.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 4.3e-21 105.5 106 53.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 7.4e-21 104.8 104 55.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.2e-20 103.2 98 54.1
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.8e-20 102.8 102 52.0
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 8.2e-20 101.3 96 63.5
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 9.1e-19 97.8 80 57.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.0e-17 94.4 103 50.5
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-17 94.0 71 60.6
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.4e-16 90.5 92 56.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.2e-16 89.0 64 71.9
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 4.2e-16 89.0 98 44.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.6e-15 87.0 101 48.5
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.1e-15 86.7 67 67.2
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 6.1e-15 85.1 94 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 3.7e-12 75.9 129 32.6


User provided reference genes

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