Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 9.4e-68 260.0 126 100.0
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 9.4e-68 260.0 126 100.0
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 6.4e-56 220.7 126 85.7
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 8.3e-56 220.3 126 85.7
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 2.3e-50 202.2 125 73.6
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.2e-49 199.9 126 81.0
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 1.2e-49 199.9 128 76.6
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 2.0e-49 199.1 126 77.8
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 2.0e-49 199.1 123 76.4
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 2.6e-49 198.7 125 76.8
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.4e-49 198.0 125 78.4
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 4.4e-49 198.0 125 78.4
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 4.4e-49 198.0 131 74.0
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 7.5e-49 197.2 121 76.9
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 1.7e-48 196.1 125 76.0
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 1.1e-47 193.4 129 72.1
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.1e-47 193.4 119 80.7
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 2.4e-47 192.2 123 76.4
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 4.1e-47 191.4 127 75.6
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 4.1e-47 191.4 133 72.2
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 1.2e-46 189.9 129 74.4
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 1.6e-46 189.5 128 75.8
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 2.7e-46 188.7 101 90.1
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 3.5e-46 188.3 130 74.6
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 3.5e-46 188.3 123 76.4
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 7.8e-46 187.2 125 73.6
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.3e-45 186.4 128 72.7
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 2.3e-45 185.7 127 74.0
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 3.9e-45 184.9 126 70.6
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 3.9e-45 184.9 132 72.0
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 5.0e-45 184.5 127 70.9
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 5.0e-45 184.5 126 70.6
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 6.6e-45 184.1 133 69.9
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 8.6e-45 183.7 127 73.2
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.1e-44 183.3 125 72.0
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 1.1e-44 183.3 126 71.4
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.1e-44 183.3 120 73.3
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.1e-44 183.3 119 75.6
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 1.5e-44 183.0 124 72.6
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 1.5e-44 183.0 127 72.4
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 1.5e-44 183.0 133 69.2
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 1.5e-44 183.0 124 67.7
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 1.9e-44 182.6 133 69.2
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 1.9e-44 182.6 133 66.9
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.9e-44 182.6 124 70.2
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 2.5e-44 182.2 117 71.8
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 2.5e-44 182.2 131 70.2
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 3.3e-44 181.8 126 69.8
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 3.3e-44 181.8 118 75.4
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.3e-44 181.8 125 73.6
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 4.3e-44 181.4 126 73.0
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 4.3e-44 181.4 131 68.7
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 4.3e-44 181.4 131 69.5
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 5.6e-44 181.0 152 61.2
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 5.6e-44 181.0 127 69.3
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 9.5e-44 180.3 135 67.4
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 1.6e-43 179.5 118 74.6
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.8e-43 178.7 124 66.1
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 2.8e-43 178.7 124 69.4
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 3.6e-43 178.3 136 66.9
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 3.6e-43 178.3 125 68.0
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 3.6e-43 178.3 131 67.9
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 4.7e-43 177.9 137 66.4
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 8.1e-43 177.2 130 66.9
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 8.1e-43 177.2 130 66.9
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 8.1e-43 177.2 130 66.9
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 1.4e-42 176.4 138 65.2
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 1.8e-42 176.0 123 69.9
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 3.1e-42 175.3 131 65.6
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 3.1e-42 175.3 138 64.5
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 3.1e-42 175.3 131 64.9
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 3.1e-42 175.3 131 66.4
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 4.0e-42 174.9 130 66.2
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 5.2e-42 174.5 130 66.2
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 6.8e-42 174.1 130 66.2
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 6.8e-42 174.1 139 61.2
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.9e-42 173.7 139 60.4
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.9e-42 173.7 139 60.4
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.9e-42 173.7 139 60.4
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 8.9e-42 173.7 119 68.1
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 1.2e-41 173.3 129 65.9
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 1.2e-41 173.3 124 68.5
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.5e-41 172.9 124 67.7
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 2.0e-41 172.6 131 64.9
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 2.0e-41 172.6 130 65.4
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 2.0e-41 172.6 130 65.4
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 2.0e-41 172.6 130 65.4
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 2.6e-41 172.2 138 62.3
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 3.4e-41 171.8 119 66.4
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 4.4e-41 171.4 124 69.4
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 4.4e-41 171.4 130 65.4
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 9.8e-41 170.2 130 64.6
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.3e-40 169.9 118 68.6
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.3e-40 169.9 121 66.9
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 1.3e-40 169.9 129 67.4
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 1.3e-40 169.9 119 66.4
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.7e-40 169.5 123 70.7
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.9e-40 168.7 123 69.9
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 3.7e-40 168.3 128 67.2
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 8.3e-40 167.2 123 66.7
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.3e-40 167.2 124 70.2
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 8.3e-40 167.2 124 68.5
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 8.3e-40 167.2 125 67.2
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 1.4e-39 166.4 124 66.1
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.4e-39 166.4 129 64.3
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 1.9e-39 166.0 127 68.5
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 2.4e-39 165.6 127 63.0
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 2.4e-39 165.6 121 66.1
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.1e-39 164.9 127 66.9
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 1.6e-38 162.9 126 61.1
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 1.6e-38 162.9 126 65.9
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.6e-38 162.9 140 60.7
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 2.7e-38 162.2 128 63.3
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 8.6e-37 157.1 117 64.1
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 4.3e-36 154.8 125 60.0
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 1.2e-35 153.3 136 62.5
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 4.7e-35 151.4 119 63.9
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 5.2e-34 147.9 117 59.0
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 6.8e-34 147.5 120 61.7
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 4.1e-31 138.3 119 59.7
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 7.1e-31 137.5 145 51.0
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 1.6e-30 136.3 119 59.7
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 3.9e-29 131.7 145 50.3
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 1.1e-28 130.2 80 80.0
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.1e-28 130.2 118 51.7
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 1.1e-28 130.2 118 52.5
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 3.6e-27 125.2 65 87.7
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 4.7e-27 124.8 94 62.8
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 2.0e-25 119.4 65 83.1
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 3.4e-25 118.6 150 47.3
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 7.6e-25 117.5 69 76.8
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 9.9e-25 117.1 70 78.6
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.7e-24 116.3 70 78.6
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.7e-21 106.3 118 44.9
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 5.6e-20 101.3 118 43.2
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 1.6e-19 99.8 66 71.2
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 9.0e-18 94.0 49 87.8
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 4.9e-16 88.2 137 35.0
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 2.1e-11 72.8 118 39.8
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 6.2e-11 71.2 43 69.8


User provided reference genes

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