Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 7.7e-206 720.3 379 100.0
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.3e-200 703.0 379 96.8
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.5e-182 641.3 382 89.3
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 2.5e-172 609.0 382 84.8
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 3.7e-168 595.1 380 84.5
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.1e-162 575.5 385 78.2
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 7.5e-161 570.9 364 83.5
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 7.5e-161 570.9 364 83.5
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.3e-160 570.1 380 79.5
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 7.0e-159 564.3 381 78.2
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.3e-157 560.1 385 77.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 8.6e-157 557.4 379 77.3
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 8.6e-157 557.4 380 77.6
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 4.3e-156 555.1 385 77.1
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 8.1e-155 550.8 381 77.4
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 1.1e-154 550.4 380 77.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.8e-154 549.7 380 76.8
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 5.2e-154 548.1 381 77.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 8.9e-154 547.4 379 75.7
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.2e-153 547.0 381 76.6
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-153 547.0 379 78.1
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.0e-153 546.2 385 75.8
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.6e-153 545.8 379 77.0
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 3.4e-153 545.4 382 76.7
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 4.4e-153 545.0 385 75.3
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 4.4e-153 545.0 378 76.7
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 5.8e-153 544.7 385 75.1
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 7.5e-153 544.3 376 76.9
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.7e-152 543.1 381 75.6
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.2e-152 542.7 371 76.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 2.9e-152 542.3 381 76.1
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 2.9e-152 542.3 385 75.3
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.9e-152 541.6 333 83.2
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.1e-151 540.4 362 78.2
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.1e-151 540.4 385 76.4
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.1e-151 540.4 378 76.7
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-151 540.0 378 75.7
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-151 540.0 378 76.5
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 1.4e-151 540.0 415 71.1
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.9e-151 539.7 333 82.9
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.9e-151 539.7 378 76.5
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.4e-151 539.3 387 74.2
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 2.4e-151 539.3 378 76.2
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 3.2e-151 538.9 333 83.8
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 3.2e-151 538.9 379 75.5
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 3.2e-151 538.9 379 76.5
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 4.1e-151 538.5 378 75.1
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.1e-151 538.5 333 82.9
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 5.4e-151 538.1 333 82.6
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.4e-151 538.1 379 74.9
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 9.2e-151 537.3 379 74.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.6e-150 536.6 333 83.2
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 2.1e-150 536.2 363 77.4
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.7e-150 535.8 384 74.7
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.7e-150 535.8 333 82.3
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.7e-150 535.8 378 74.6
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 3.5e-150 535.4 378 75.9
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 3.5e-150 535.4 383 74.4
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 4.6e-150 535.0 379 75.2
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 4.6e-150 535.0 383 75.2
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.0e-150 534.6 378 74.9
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 6.0e-150 534.6 363 76.9
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 7.8e-150 534.3 379 75.2
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 7.8e-150 534.3 377 74.8
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.0e-149 533.9 363 76.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-149 533.5 378 74.3
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.3e-149 533.5 382 75.4
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.7e-149 533.1 363 76.9
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 2.3e-149 532.7 384 73.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 3.0e-149 532.3 380 74.7
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 3.9e-149 531.9 377 75.6
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 3.9e-149 531.9 380 75.5
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 6.6e-149 531.2 379 74.7
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 6.6e-149 531.2 378 75.4
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.5e-148 530.0 380 75.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 1.5e-148 530.0 382 75.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.9e-148 529.6 379 74.1
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.9e-148 529.6 378 73.8
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.9e-148 529.6 378 73.8
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 3.3e-148 528.9 333 82.3
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 4.3e-148 528.5 345 77.7
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 4.3e-148 528.5 387 73.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 5.6e-148 528.1 364 77.2
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 7.3e-148 527.7 388 73.5
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 7.3e-148 527.7 378 73.3
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 9.5e-148 527.3 379 74.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 2.1e-147 526.2 378 73.5
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.1e-147 526.2 378 74.3
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 2.8e-147 525.8 379 73.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 3.6e-147 525.4 378 73.0
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 8.1e-147 524.2 356 77.0
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.1e-146 523.9 377 73.7
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.1e-146 523.9 377 73.7
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.4e-146 523.5 363 76.6
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.8e-146 523.1 339 79.9
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.8e-146 521.2 400 70.5
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 6.8e-146 521.2 329 81.8
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 8.9e-146 520.8 342 78.1
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.2e-145 520.4 378 74.1
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.0e-145 519.6 334 79.6
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.6e-145 519.2 378 72.8
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 4.4e-145 518.5 360 76.4
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 9.2e-143 510.8 387 71.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.1e-142 509.6 331 78.9
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 4.6e-142 508.4 388 70.9
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 6.0e-142 508.1 379 71.2
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.3e-141 506.1 329 78.7
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 3.3e-140 502.3 333 78.1
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.6e-139 500.0 332 78.3
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.8e-139 499.2 407 67.6
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 6.2e-139 498.0 297 85.5
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 8.1e-139 497.7 385 71.2
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 2.0e-137 493.0 307 82.1
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.4e-135 486.9 297 83.5
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 6.0e-134 481.5 297 82.2
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.3e-133 480.3 297 81.5
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.5e-132 476.9 378 69.3
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 4.3e-132 475.3 344 71.8
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 7.1e-127 458.0 325 72.6
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 7.1e-127 458.0 325 71.7
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.3e-125 453.8 383 67.9
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 6.7e-125 451.4 343 70.8
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-124 448.7 328 73.2
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.1e-122 442.6 426 57.7
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.1e-116 424.1 379 65.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.3e-112 410.6 319 67.1
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.2e-111 405.6 246 86.2
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.1e-110 403.3 272 78.3
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 7.4e-108 394.8 329 62.3
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.8e-107 392.1 290 68.6
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 9.0e-106 387.9 324 66.4
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 5.3e-98 362.1 313 60.7
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 5.0e-88 328.9 198 85.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.2e-75 287.0 198 75.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.2e-75 287.0 198 75.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 2.7e-70 270.0 166 80.7
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 8.3e-67 258.5 379 45.6
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.7e-64 250.8 294 46.6
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 3.5e-57 226.5 293 44.7
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.3e-56 224.6 131 84.7
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 9.5e-55 218.4 332 41.6
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 6.8e-53 212.2 154 75.3
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.8e-46 190.3 182 61.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 2.3e-45 187.2 197 57.9
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.2e-34 148.7 213 45.5
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.6e-33 147.9 135 60.0
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.5e-33 146.7 149 55.7
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 6.8e-29 132.5 80 83.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 4.9e-27 126.3 88 68.2
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 4.3e-15 86.7 75 62.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 2.8e-14 84.0 47 89.4
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.1e-10 72.0 90 46.7
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 3.2e-10 70.5 62 61.3
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 7.1e-10 69.3 54 68.5
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.3e-08 65.1 42 64.3
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 3.3e-07 60.5 43 69.8


User provided reference genes

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