Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 0.0e+00 2206.4 1266 100.0
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 0.0e+00 1571.6 977 88.0
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 0.0e+00 1283.1 1495 56.7
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 1.5e-306 1056.6 1470 51.8
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.2e-271 940.6 1459 49.8
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.2e-217 760.4 1477 44.8
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 2.8e-151 540.8 1670 37.8
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 3.2e-139 500.7 1518 37.7
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 4.2e-139 500.4 1592 35.7
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 4.2e-139 500.4 1592 35.7
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 4.2e-139 500.4 1592 35.7
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.2e-130 472.2 1451 37.9
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 1.1e-128 465.7 1471 36.4
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 3.1e-126 457.6 1512 34.7
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 6.9e-126 456.4 1566 35.7
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 9.0e-126 456.1 1541 35.8
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 8.4e-124 449.5 1491 36.4
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 7.1e-123 446.4 1454 34.1
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.3e-121 442.2 1451 35.2
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.5e-120 438.7 1398 36.3
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 8.5e-116 422.9 1453 34.3
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 3.0e-113 414.5 1482 35.3
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 8.8e-113 412.9 1455 34.0
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 1.1e-112 412.5 1555 33.2
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.0e-112 411.8 1435 32.5
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.3e-111 409.1 1441 36.6
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.2e-111 408.3 1527 33.3
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.8e-110 405.2 1389 32.6
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.2e-109 402.5 1454 32.1
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.0e-109 401.7 1713 36.1
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 5.9e-109 400.2 1404 35.1
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.0e-108 399.4 1421 33.8
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 6.5e-108 396.7 1432 32.3
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.2e-107 394.0 1443 33.0
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.0e-105 389.4 1730 32.9
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.4e-102 378.3 1401 32.1
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 9.1e-102 376.3 1460 38.2
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.5e-101 375.6 1733 32.5
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 4.5e-101 374.0 1799 33.2
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.3e-100 372.5 1451 31.7
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.9e-100 371.3 1431 32.2
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 5.0e-100 370.5 1360 37.0
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 7.2e-99 366.7 1485 31.2
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.0e-97 362.8 1589 31.0
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.3e-95 355.9 1352 36.2
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.8e-95 354.8 1601 33.2
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 8.2e-95 353.2 1513 32.5
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 5.3e-94 350.5 1515 31.0
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 5.9e-93 347.1 1469 30.5
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.0e-92 346.3 1236 30.7
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.7e-92 345.5 1481 31.2
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.8e-89 335.5 1360 35.1
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.2e-88 332.8 1523 32.9
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 1.6e-85 322.4 1375 37.1
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 2.0e-85 322.0 1355 36.4
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 1.5e-83 315.8 1312 35.3
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 8.0e-82 310.1 1382 36.0
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.0e-81 308.1 1404 36.2
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 7.5e-80 303.5 1297 36.4
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 1.7e-79 302.4 1418 31.1
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 1.2e-77 296.2 1385 34.1
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 1.0e-76 293.1 1379 35.5
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.0e-76 293.1 218 68.3
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 6.1e-74 283.9 1412 32.3
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.8e-73 280.4 222 65.3
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 6.8e-73 280.4 219 64.4
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.4e-72 278.1 1152 30.5
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 5.7e-72 277.3 1410 29.3
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 5.7e-72 277.3 1374 35.9
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 9.8e-72 276.6 1454 33.3
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.2e-71 275.4 219 64.8
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 6.4e-71 273.9 207 66.7
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.4e-70 270.8 652 35.7
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 3.9e-68 264.6 1391 33.7
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 5.6e-67 260.8 169 69.8
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.6e-66 258.1 1216 30.2
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 8.0e-66 256.9 1394 35.3
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 2.0e-64 252.3 1656 31.8
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 3.4e-64 251.5 1369 33.8
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 9.2e-62 243.4 187 63.6
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 4.6e-61 241.1 170 65.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 1.9e-59 235.7 1386 33.9
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.9e-59 235.7 140 74.3
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 3.1e-57 228.4 1374 26.9
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 8.9e-57 226.9 1442 30.2
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.9e-55 221.1 873 30.6
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 2.4e-54 218.8 1098 29.9
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.4e-54 217.6 801 30.6
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 3.0e-52 211.8 679 32.8
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 1.6e-50 206.1 415 38.1
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 2.8e-50 205.3 1392 30.2
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.5e-48 199.5 662 32.8
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 2.6e-48 198.7 1299 28.6
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.7e-47 196.1 1473 28.0
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.6e-45 189.5 1286 27.4
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.6e-45 189.5 414 37.4
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.3e-44 186.4 214 48.6
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 6.6e-44 184.1 808 30.7
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.2e-42 179.9 868 29.6
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.2e-42 177.6 102 76.5
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.4e-41 176.4 220 47.3
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 6.8e-41 174.1 103 68.0
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 8.4e-39 167.2 171 56.7
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.6e-37 162.9 657 31.4
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.5e-35 156.4 182 48.4
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 4.3e-35 154.8 749 29.1
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 2.1e-34 152.5 157 51.0
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.3e-31 143.3 294 37.4
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 2.4e-30 139.0 230 40.0
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 7.1e-30 137.5 176 46.0
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.1e-29 136.0 85 71.8
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.1e-29 136.0 85 71.8
Hund18872 Selenicereus undatus HOM05D005457 ORTHO05D006350 3.0e-28 132.1 495 27.7
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 5.1e-28 131.3 214 40.2
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 7.6e-24 117.5 465 29.9
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 2.2e-23 115.9 517 30.0
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 2.2e-23 115.9 141 48.9
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.9e-22 112.8 678 26.7
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.1e-17 97.1 96 51.0
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 1.8e-17 96.3 139 43.2
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.2e-16 93.6 197 29.4
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 2.2e-15 89.4 62 61.3
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 2.9e-15 89.0 140 26.4
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 8.4e-15 87.4 136 44.1
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 1.9e-14 86.3 131 32.8
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 4.2e-14 85.1 115 33.0
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 7.4e-11 74.3 86 54.7
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 2.0e-08 66.2 218 32.6
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 2.2e-07 62.8 364 29.4
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 1.1e-06 60.5 54 55.6
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 2.5e-06 59.3 54 51.9


User provided reference genes

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