Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001523 Chenopodium quinoa HOM05D000355 ORTHO05D000227 2.5e-85 318.9 184 100.0
AUR62020260 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.4e-56 223.4 164 82.9
EL10Ac7g16334 Beta vulgaris HOM05D000355 ORTHO05D000227 1.6e-31 140.2 215 47.0
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.1e-27 125.9 214 43.5
Lsat_1_v5_gn_5_165660 Lactuca sativa HOM05D000355 ORTHO05D000227 4.3e-21 105.5 211 41.2
Dinv31715 Davidia involucrata HOM05D000355 ORTHO05D000227 5.7e-21 105.1 210 40.5
Dinv21173 Davidia involucrata HOM05D000355 ORTHO05D000227 1.3e-20 104.0 209 40.7
Hma1.2p1_0820F.1_g223991 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 2.2e-20 103.2 199 40.2
Hma1.2p1_0820F.1_g224010 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 2.2e-20 103.2 199 40.2
PGR102G1031 Punica granatum HOM05D000355 ORTHO05D000227 3.1e-19 99.4 219 39.7
CSS0014070 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.6e-18 96.3 202 38.6
CSS0037359 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.6e-18 96.3 202 38.6
ECA248G0772 Erigeron canadensis HOM05D000355 ORTHO05D000227 2.6e-18 96.3 223 37.7
DCAR_013411 Daucus carota HOM05D000355 ORTHO05D000227 3.4e-18 95.9 205 39.0
HanXRQChr13g0390171 Helianthus annuus HOM05D000355 ORTHO05D000227 4.5e-18 95.5 214 36.4
Nitab4.5_0001875g0060 Nicotiana tabacum HOM05D000355 ORTHO05D000227 1.0e-17 94.4 214 36.9
ClCG01G012080 Citrullus lanatus HOM05D000355 ORTHO05D000227 1.7e-17 93.6 220 46.4
Actinidia07916 Actinidia chinensis HOM05D000355 ORTHO05D000227 2.2e-17 93.2 208 38.9
MELO3C004692.2 Cucumis melo HOM05D000355 ORTHO05D000227 5.5e-16 88.6 219 43.4
CsaV3_1G014950 Cucumis sativus L. HOM05D000355 ORTHO05D000227 5.5e-16 88.6 219 43.4
Oeu010769.1 Olea europaea HOM05D000355 ORTHO05D000227 1.2e-15 87.4 213 37.1
PSO801G0353 Papaver somniferum HOM05D000355 ORTHO05D000227 1.2e-15 87.4 223 35.0
MBI17_g46127_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 1.6e-15 87.0 226 33.6
CSS0023293 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.1e-15 86.7 204 37.3
PSO339G5944 Papaver somniferum HOM05D000355 ORTHO05D000227 2.1e-15 86.7 226 34.5
SalBow5G1208 Salvia bowleyana HOM05D000355 ORTHO05D000227 2.7e-15 86.3 208 36.1
Eucgr.J00504 Eucalyptus grandis HOM05D000355 ORTHO05D000227 4.7e-15 85.5 206 38.8
Sed0022708 Sechium edule HOM05D000355 ORTHO05D000227 6.1e-15 85.1 218 41.7
BcaB06g25345 Brassica carinata HOM05D000355 ORTHO05D000227 1.0e-14 84.3 193 37.8
TAR633G1747 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.0e-14 84.3 224 35.3
Dinv22826 Davidia involucrata HOM05D000052 ORTHO05D001127 1.8e-14 83.6 204 37.7
CANSAT54G1123 Cannabis sativa HOM05D000355 ORTHO05D000227 2.3e-14 83.2 226 33.2
Prupe.6G134100 Prunus persica HOM05D000355 ORTHO05D000227 6.7e-14 81.6 213 41.8
SGA_v2.0_scaffold184G39985 Striga asiatica HOM05D000355 ORTHO05D000227 6.7e-14 81.6 197 36.0
TAR636G3066 Trochodendron aralioides HOM05D000355 ORTHO05D000227 6.7e-14 81.6 207 32.9
A05p34380 Brassica napus HOM05D000355 ORTHO05D000227 8.8e-14 81.3 190 35.3
TWI79G1323 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 1.1e-13 80.9 225 34.7
BraA05t22259Z Brassica rapa HOM05D000355 ORTHO05D000227 2.0e-13 80.1 189 34.9
BcaB06g29531 Brassica carinata HOM05D000355 ORTHO05D000227 3.3e-13 79.3 196 35.7
C05p52160 Brassica napus HOM05D000355 ORTHO05D000227 3.3e-13 79.3 196 35.7
BolC5t33900H Brassica oleracea HOM05D000355 ORTHO05D000227 3.3e-13 79.3 196 35.7
PGSC0003DMG400008941 Solanum tuberosum HOM05D000355 ORTHO05D000227 4.4e-13 79.0 223 34.1
TWI75G0311 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 5.7e-13 78.6 221 33.5
MSTRG.26626 Avicennia marina HOM05D000355 ORTHO05D000227 7.4e-13 78.2 205 35.1
HanXRQChr01g0010171 Helianthus annuus HOM05D000355 ORTHO05D000227 7.4e-13 78.2 144 41.7
Thecc.09G280300 Theobroma cacao HOM05D000355 ORTHO05D000227 7.4e-13 78.2 232 34.1
Nitab4.5_0001933g0070 Nicotiana tabacum HOM05D000355 ORTHO05D000227 9.7e-13 77.8 223 34.1
Cc06_g06130 Coffea canephora HOM05D000355 ORTHO05D000227 1.7e-12 77.0 225 34.7
Actinidia07253 Actinidia chinensis HOM05D000355 ORTHO05D000227 2.2e-12 76.6 196 33.7
CiPaw.10G012000 Carya illinoinensis HOM05D000355 ORTHO05D000227 2.2e-12 76.6 208 35.1
QL07p038276 Quercus lobata HOM05D000355 ORTHO05D000227 2.2e-12 76.6 208 36.1
Sopen09g004880 Solanum pennellii HOM05D000355 ORTHO05D000227 2.2e-12 76.6 223 33.6
Haze_19647 Corylus avellana HOM05D000355 ORTHO05D000227 2.8e-12 76.3 202 38.6
Nitab4.5_0009390g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 2.8e-12 76.3 223 33.2
Dinv42536 Davidia involucrata HOM05D000355 ORTHO05D000227 4.8e-12 75.5 196 43.9
TWI31G0922 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 4.8e-12 75.5 221 34.8
TWI74G0135 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 4.8e-12 75.5 212 36.8
BcaC01g03905 Brassica carinata HOM05D000355 ORTHO05D000227 1.1e-11 74.3 197 35.0
Cfa016641 Carpinus fangiana HOM05D000355 ORTHO05D000227 1.1e-11 74.3 202 35.6
Migut.L01800 Erythranthe guttata HOM05D000355 ORTHO05D000227 1.1e-11 74.3 205 34.1
QL01p012022 Quercus lobata HOM05D000355 ORTHO05D000227 1.1e-11 74.3 228 34.6
Solyc09g010140.3 Solanum lycopersicum HOM05D000355 ORTHO05D000227 1.1e-11 74.3 223 33.6
CAN.G397.83 Capsicum annuum HOM05D000355 ORTHO05D000227 1.4e-11 73.9 142 39.4
COL.COLO4_34022 Corchorus olitorius HOM05D000355 ORTHO05D000227 1.4e-11 73.9 229 32.3
Thecc.05G094300 Theobroma cacao HOM05D000355 ORTHO05D000227 1.4e-11 73.9 187 38.5
Duzib150G0738 Durio zibethinus HOM05D000355 ORTHO05D000227 1.8e-11 73.6 228 31.1
Prupe.7G102100 Prunus persica HOM05D000355 ORTHO05D000227 2.4e-11 73.2 210 34.3
Ciclev10012644m.g Citrus clementina HOM05D000355 ORTHO05D000227 4.1e-11 72.4 129 41.1
Duzib168G0847 Durio zibethinus HOM05D000355 ORTHO05D000227 4.1e-11 72.4 232 31.5
FvH4_3g25360 Fragaria vesca HOM05D000355 ORTHO05D000227 4.1e-11 72.4 227 39.2
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 4.1e-11 72.4 227 39.2
Lalb_Chr01g0018021 Lupinus albus HOM05D000355 ORTHO05D000227 4.1e-11 72.4 196 33.7
Peaxi162Scf00096g00084 Petunia axillaris HOM05D000355 ORTHO05D000227 4.1e-11 72.4 209 34.4
CiPaw.13G134300 Carya illinoinensis HOM05D000355 ORTHO05D000227 5.3e-11 72.0 220 42.3
CAN.G841.17 Capsicum annuum HOM05D000355 ORTHO05D000227 7.0e-11 71.6 215 32.6
BraA03t13060Z Brassica rapa HOM05D000355 ORTHO05D000227 9.1e-11 71.2 198 34.3
Lalb_Chr03g0028171 Lupinus albus HOM05D000355 ORTHO05D000227 9.1e-11 71.2 211 36.0
Psat3g031640 Pisum sativum HOM05D000355 ORTHO05D000227 9.1e-11 71.2 209 36.8
A03p39110 Brassica napus HOM05D000355 ORTHO05D000227 1.2e-10 70.9 199 34.2
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 1.2e-10 70.9 204 35.8
Duzib093G1640 Durio zibethinus HOM05D000355 ORTHO05D000227 1.6e-10 70.5 188 31.9
Glyma.12G185900 Glycine max HOM05D000355 ORTHO05D000227 1.6e-10 70.5 145 40.7
MD14G1030000 Malus domestica HOM05D000355 ORTHO05D000227 1.6e-10 70.5 199 34.7
Potri.006G209500 Populus trichocarpa HOM05D000355 ORTHO05D000227 1.6e-10 70.5 215 40.5
Sopen10g032740 Solanum pennellii HOM05D000355 ORTHO05D000227 1.6e-10 70.5 228 31.1
GSVIVG01033884001 Vitis vinifera HOM05D000355 ORTHO05D000227 1.6e-10 70.5 206 33.0
C03p47390 Brassica napus HOM05D000355 ORTHO05D000227 2.0e-10 70.1 195 34.4
BolC3t17009H Brassica oleracea HOM05D000355 ORTHO05D000227 2.0e-10 70.1 195 34.4
FAN25G0540 Fragaria x ananassa HOM05D000355 ORTHO05D000227 2.0e-10 70.1 220 38.2
Nitab4.5_0003661g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 2.0e-10 70.1 198 37.9
RcHm_v2.0_Chr3g0474691 Rosa chinensis HOM05D000355 ORTHO05D000227 2.0e-10 70.1 208 34.1
COL.COLO4_03549 Corchorus olitorius HOM05D000355 ORTHO05D000227 2.6e-10 69.7 190 32.6
Eucgr.B03837 Eucalyptus grandis HOM05D000355 ORTHO05D000227 2.6e-10 69.7 105 44.8
Manes.11G163200 Manihot esculenta HOM05D000355 ORTHO05D000227 2.6e-10 69.7 227 34.4
Sopen06g030700 Solanum pennellii HOM05D000355 ORTHO05D000227 2.6e-10 69.7 203 35.0
A01p38890 Brassica napus HOM05D000355 ORTHO05D000227 3.5e-10 69.3 194 33.5
BraA01t03935Z Brassica rapa HOM05D000355 ORTHO05D000227 3.5e-10 69.3 194 33.5
CiPaw.09G016700 Carya illinoinensis HOM05D000355 ORTHO05D000227 3.5e-10 69.3 213 33.8
RcHm_v2.0_Chr5g0046711 Rosa chinensis HOM05D000355 ORTHO05D000227 5.9e-10 68.6 226 40.7
FAN21G1533 Fragaria x ananassa HOM05D000355 ORTHO05D000227 7.7e-10 68.2 230 40.0
PGSC0003DMG400028250 Solanum tuberosum HOM05D000355 ORTHO05D000227 7.7e-10 68.2 228 31.6
Haze_23357 Corylus avellana HOM05D000355 ORTHO05D000227 1.3e-09 67.4 225 42.7
Glyma.13G315700 Glycine max HOM05D000355 ORTHO05D000227 1.7e-09 67.0 137 39.4
BcaC09g48463 Brassica carinata HOM05D000355 ORTHO05D000227 2.2e-09 66.6 199 32.2
C01p49480 Brassica napus HOM05D000355 ORTHO05D000227 2.2e-09 66.6 199 32.2
BolC1t04905H Brassica oleracea HOM05D000355 ORTHO05D000227 2.2e-09 66.6 199 32.2
CAN.G919.34 Capsicum annuum HOM05D000355 ORTHO05D000227 2.2e-09 66.6 206 31.1
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 2.2e-09 66.6 191 35.1
Cpa.g.sc195.12 Carica papaya HOM05D000355 ORTHO05D000227 3.8e-09 65.9 144 38.2
Cfa009997 Carpinus fangiana HOM05D000355 ORTHO05D000227 3.8e-09 65.9 229 39.3
Ciclev10030109m.g Citrus clementina HOM05D000355 ORTHO05D000227 3.8e-09 65.9 179 35.8
Atru.chr3.3192 Acer truncatum HOM05D000355 ORTHO05D000227 5.0e-09 65.5 182 41.8
CiPaw.08G090300 Carya illinoinensis HOM05D000355 ORTHO05D000227 5.0e-09 65.5 199 32.7
Manes.09G052900 Manihot esculenta HOM05D000355 ORTHO05D000227 5.0e-09 65.5 195 34.4
Medtr7g105130 Medicago truncatula HOM05D000355 ORTHO05D000227 5.0e-09 65.5 204 33.3
Ah.08g210430 Amaranthus hybridus HOM05D000355 ORTHO05D000227 6.5e-09 65.1 196 32.1
SalBow6G0298 Salvia bowleyana HOM05D000355 ORTHO05D000227 6.5e-09 65.1 196 33.7
Thhalv10021433m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 8.5e-09 64.7 209 33.0
Lj1g0025147 Lotus japonicus HOM05D000355 ORTHO05D000227 1.1e-08 64.3 205 34.6
PGSC0003DMG400005883 Solanum tuberosum HOM05D000355 ORTHO05D000227 1.1e-08 64.3 209 34.4
SGA_v2.0_scaffold100G29595 Striga asiatica HOM05D000355 ORTHO05D000227 1.1e-08 64.3 199 31.7
HPP92_001103 Vanilla planifolia HOM05D000355 ORTHO05D000227 1.5e-08 63.9 223 30.0
BcaB04g20951 Brassica carinata HOM05D000355 ORTHO05D000227 1.9e-08 63.5 198 33.3
BcaC01g03900 Brassica carinata HOM05D000355 ORTHO05D000227 1.9e-08 63.5 198 32.8
CiPaw.03G275300 Carya illinoinensis HOM05D000355 ORTHO05D000227 1.9e-08 63.5 208 33.2
Sp3g13240 Schrenkiella parvula HOM05D000355 ORTHO05D000227 1.9e-08 63.5 209 32.5
Gorai.006G112700 Gossypium raimondii HOM05D000355 ORTHO05D000227 4.2e-08 62.4 225 30.7
Ca_09022_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 5.5e-08 62.0 203 35.5
Phvul.001G191900 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 5.5e-08 62.0 201 33.3
Rhsim13G0112800 Rhododendron simsii HOM05D000355 ORTHO05D000227 5.5e-08 62.0 212 34.4
Sabra16G0079000 Salix brachista HOM05D000355 ORTHO05D000227 5.5e-08 62.0 208 33.2
TAR375G0501 Trochodendron aralioides HOM05D000355 ORTHO05D000227 5.5e-08 62.0 203 29.1
unitig_0.g1475 Utricularia gibba HOM05D000355 ORTHO05D000227 9.4e-08 61.2 199 32.2
Migut.N02479 Erythranthe guttata HOM05D000355 ORTHO05D000227 1.6e-07 60.5 222 32.0
TAR629G2272 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.6e-07 60.5 209 29.2
MSTRG.21035 Avicennia marina HOM05D000355 ORTHO05D000227 2.1e-07 60.1 214 30.8
Phvul.005G122700 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 3.6e-07 59.3 127 36.2
SGA_v2.0_scaffold22G09853 Striga asiatica HOM05D000355 ORTHO05D000227 3.6e-07 59.3 188 31.4
CsaV3_1G015860 Cucumis sativus L. HOM05D000355 ORTHO05D000227 4.7e-07 58.9 93 41.9
FAN09G4885 Fragaria x ananassa HOM05D000355 ORTHO05D000227 4.7e-07 58.9 207 33.8
Sc02g0000430 Simmondsia chinensis HOM05D000355 ORTHO05D000227 4.7e-07 58.9 212 29.7
Oeu002366.1 Olea europaea HOM05D000355 ORTHO05D000227 8.0e-07 58.2 214 32.7
Lj3g0023877 Lotus japonicus HOM05D000355 ORTHO05D000227 1.0e-06 57.8 223 32.7
FvH4_6g19420 Fragaria vesca HOM05D000355 ORTHO05D000227 1.4e-06 57.4 207 33.3
Lj3g0007377 Lotus japonicus HOM05D000355 ORTHO05D000227 1.4e-06 57.4 182 31.9
Nn1g00374 Nelumbo nucifera HOM05D000355 ORTHO05D000227 1.4e-06 57.4 201 28.9
arahy.Tifrunner.gnm1.ann1.I99STC Arachis hypogaea HOM05D000355 ORTHO05D000227 1.8e-06 57.0 145 37.2
AUR62006222 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.8e-06 57.0 193 30.1
CSS0018579 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.3e-06 56.6 185 29.7
Os01g0862600 Oryza sativa ssp. japonica HOM05D000355 ORTHO05D000227 2.3e-06 56.6 213 31.9
MBI12_g30972_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 3.0e-06 56.2 210 29.5
AUR62036996 Chenopodium quinoa HOM05D000355 ORTHO05D000227 4.0e-06 55.8 194 32.0
Gohir.A09G096300 Gossypium hirsutum HOM05D000355 ORTHO05D000227 4.0e-06 55.8 65 47.7
Gohir.D09G096000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 4.0e-06 55.8 65 47.7
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 5.2e-06 55.5 190 32.1
THA.LOC104810921 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 6.7e-06 55.1 230 29.1
Zm00001eb147040 Zea mays HOM05D000355 ORTHO05D000227 6.7e-06 55.1 203 30.0
VMungo1383G1562 Vigna mungo HOM05D000355 ORTHO05D000227 8.8e-06 54.7 201 31.8


User provided reference genes

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