Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.3e-182 642.1 329 100.0
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.7e-167 591.3 329 93.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 9.2e-139 497.3 327 78.3
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.7e-124 449.9 296 77.4
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.2e-114 417.2 333 68.2
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 5.8e-109 398.3 331 65.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.8e-95 352.1 338 60.1
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 3.1e-94 349.4 221 81.4
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 5.3e-94 348.6 327 62.1
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 9.0e-94 347.8 305 62.6
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.2e-93 347.4 335 58.2
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.5e-93 347.1 231 76.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.0e-93 346.7 216 81.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.0e-93 346.7 315 61.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 5.8e-93 345.1 339 57.8
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.3e-92 344.0 339 57.8
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.3e-92 344.0 228 77.6
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.8e-92 342.4 231 76.6
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.8e-92 342.4 231 77.9
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 8.4e-92 341.3 232 75.4
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 8.4e-92 341.3 221 78.7
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-91 340.9 224 79.0
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-91 340.5 224 79.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.9e-91 340.1 221 79.6
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.4e-91 339.7 221 78.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 3.2e-91 339.3 207 83.1
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.2e-91 339.3 230 76.5
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 5.5e-91 338.6 335 59.4
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.1e-91 338.2 221 77.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.2e-90 337.4 222 77.9
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.2e-90 337.4 227 78.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.6e-90 337.0 221 79.2
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.1e-90 336.7 221 78.7
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.1e-90 336.7 291 64.6
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 4.6e-90 335.5 219 79.0
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.6e-90 335.5 221 77.4
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 6.0e-90 335.1 291 62.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 6.0e-90 335.1 254 68.9
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 6.0e-90 335.1 228 76.3
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 7.9e-90 334.7 221 77.8
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.3e-89 334.0 221 78.3
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.3e-89 334.0 221 74.7
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 2.3e-89 333.2 222 75.2
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 5.1e-89 332.0 222 77.0
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.1e-89 332.0 223 78.0
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 5.1e-89 332.0 221 77.4
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 6.7e-89 331.6 223 77.1
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 8.7e-89 331.3 222 77.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 8.7e-89 331.3 222 77.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 8.7e-89 331.3 221 77.8
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.1e-88 330.9 273 66.3
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-88 330.5 308 60.4
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-88 330.5 308 60.4
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.9e-88 330.1 222 76.6
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.9e-88 330.1 222 74.8
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.9e-88 330.1 220 79.1
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.5e-88 329.7 222 76.1
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.3e-88 329.3 221 76.9
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.3e-88 329.3 221 76.9
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 5.6e-88 328.6 222 76.1
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 5.6e-88 328.6 222 77.5
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.6e-88 328.6 222 74.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 9.6e-88 327.8 222 74.8
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-87 327.4 221 76.9
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.6e-87 327.0 222 74.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.8e-87 326.2 222 75.7
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 3.7e-87 325.9 223 76.7
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.7e-87 325.9 223 76.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 3.7e-87 325.9 280 65.0
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.7e-87 325.9 221 76.5
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 4.8e-87 325.5 216 77.8
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.8e-87 325.5 222 75.2
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 8.2e-87 324.7 223 76.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.2e-87 324.7 221 76.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.8e-86 323.6 222 75.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 2.4e-86 323.2 244 70.5
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 3.1e-86 322.8 217 77.4
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 4.0e-86 322.4 233 71.2
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 5.3e-86 322.0 221 75.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 6.9e-86 321.6 220 75.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 6.9e-86 321.6 222 73.9
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.5e-85 320.5 221 74.7
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.5e-85 320.5 223 76.7
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.6e-85 319.7 244 70.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.6e-85 319.7 216 75.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.6e-85 319.7 286 61.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 3.4e-85 319.3 215 75.8
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 3.4e-85 319.3 229 72.5
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 4.5e-85 318.9 222 74.3
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.5e-85 318.9 221 74.2
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 4.5e-85 318.9 221 74.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 5.8e-85 318.5 289 60.9
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.8e-85 318.5 221 73.8
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.6e-85 318.2 222 73.0
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 7.6e-85 318.2 221 73.8
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 7.6e-85 318.2 229 72.1
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.0e-84 317.8 227 70.5
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.3e-84 317.4 222 74.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.4e-83 313.9 219 74.9
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.9e-83 313.5 211 76.3
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 4.6e-82 308.9 216 74.5
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.0e-81 307.8 265 62.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.3e-81 307.4 215 74.0
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.8e-81 307.0 218 71.6
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.8e-81 307.0 238 68.1
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.8e-81 307.0 219 72.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.3e-81 306.6 218 72.5
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.3e-81 306.6 216 74.1
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.1e-80 304.3 213 72.3
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.5e-80 303.9 236 68.2
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.5e-80 303.9 286 61.2
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.9e-80 303.5 223 70.0
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.5e-80 303.1 216 73.6
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 7.4e-80 301.6 238 66.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 9.7e-80 301.2 219 69.4
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.7e-79 299.3 217 70.0
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 8.2e-79 298.1 228 68.9
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.4e-78 296.6 219 70.3
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 3.1e-78 296.2 222 69.8
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.1e-78 295.8 222 68.9
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.2e-77 294.3 222 67.6
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 8.5e-76 288.1 174 82.2
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 8.5e-76 288.1 265 61.1
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 6.7e-73 278.5 174 83.3
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.5e-67 260.0 166 80.7
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.6e-66 256.1 187 72.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 3.9e-65 252.7 235 58.3
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.6e-64 250.0 166 78.3
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.3e-64 249.6 273 54.9
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 5.7e-64 248.8 366 45.1
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.7e-63 246.1 276 53.3
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.5e-61 240.7 208 63.9
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.5e-61 240.7 208 63.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 3.4e-61 239.6 180 71.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.4e-61 239.6 201 67.2
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.4e-59 231.5 187 68.4
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.2e-58 231.1 185 67.0
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.7e-57 225.3 157 76.4
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.0e-56 223.8 171 71.3
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.3e-56 223.0 174 66.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.2e-53 214.5 161 72.0
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.1e-51 208.0 185 60.0
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 3.2e-51 206.5 184 59.8
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 4.2e-51 206.1 180 60.0
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 7.2e-51 205.3 159 67.3
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.6e-50 203.0 345 41.2
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 8.8e-41 171.8 154 58.4
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 2.7e-29 133.7 238 36.6
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.0e-28 131.7 273 34.4
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 4.9e-23 112.8 65 81.5
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.6e-20 102.1 203 35.5
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.1e-18 97.4 206 33.5
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 5.8e-16 89.4 232 31.0
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 3.2e-14 83.6 233 32.6
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.7e-10 69.7 46 76.1
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.8e-09 67.8 38 76.3
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 5.2e-09 66.2 51 64.7
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.8e-09 65.9 50 64.0
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.0e-08 64.3 56 60.7
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 2.6e-08 63.9 178 28.7


User provided reference genes

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