Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001096 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.8e-68 261.9 141 100.0
AUR62008921 Chenopodium quinoa HOM05D001779 ORTHO05D001753 9.3e-64 246.9 140 95.0
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 3.2e-40 168.7 140 74.3
Oeu043135.1 Olea europaea HOM05D001779 ORTHO05D001753 1.1e-24 117.1 138 60.1
CSS0033397 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.4e-24 116.7 141 56.0
Hund18390 Selenicereus undatus HOM05D001779 ORTHO05D001753 5.5e-24 114.8 160 52.5
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 1.2e-23 113.6 137 56.2
COL.COLO4_15672 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.6e-23 113.2 142 53.5
TWI18G0520 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 2.7e-23 112.5 139 54.0
Nn1g07882 Nelumbo nucifera HOM05D001779 ORTHO05D001753 4.6e-23 111.7 66 90.9
THA.LOC104802670 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 4.6e-23 111.7 144 52.1
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 6.1e-23 111.3 98 67.3
Sp2g19140 Schrenkiella parvula HOM05D001779 ORTHO05D001753 1.4e-22 110.2 147 51.7
Cpa.g.sc8.143 Carica papaya HOM05D001779 ORTHO05D001753 1.8e-22 109.8 135 57.8
Dinv12682 Davidia involucrata HOM05D001779 ORTHO05D001753 3.9e-22 108.6 139 55.4
CANSAT35G0239 Cannabis sativa HOM05D001779 ORTHO05D001753 8.8e-22 107.5 143 58.7
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 8.8e-22 107.5 137 56.9
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 8.8e-22 107.5 137 56.9
Rhsim13G0046000 Rhododendron simsii HOM05D001779 ORTHO05D001753 1.1e-21 107.1 137 56.2
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 2.0e-21 106.3 139 56.1
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 2.0e-21 106.3 137 56.9
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 2.6e-21 105.9 137 53.3
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 2.6e-21 105.9 139 52.5
Aqoxy5G00031 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 7.4e-21 104.4 86 72.1
MD10G1163400 Malus domestica HOM05D001779 ORTHO05D001753 9.7e-21 104.0 136 53.7
Prupe.8G201700 Prunus persica HOM05D001779 ORTHO05D001753 1.3e-20 103.6 72 83.3
PGR044G1326 Punica granatum HOM05D001779 ORTHO05D001753 1.7e-20 103.2 155 52.9
vmacro02765 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 1.7e-20 103.2 136 55.1
Migut.D02488 Erythranthe guttata HOM05D001779 ORTHO05D001753 2.2e-20 102.8 69 84.1
Ciclev10019744m.g Citrus clementina HOM05D001779 ORTHO05D001753 2.8e-20 102.4 145 52.4
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 4.8e-20 101.7 137 54.0
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 4.8e-20 101.7 130 55.4
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 6.3e-20 101.3 134 55.2
Cc01_g16930 Coffea canephora HOM05D001779 ORTHO05D001753 8.2e-20 100.9 138 52.2
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 8.2e-20 100.9 123 58.5
PSO674G0008 Papaver somniferum HOM05D001779 ORTHO05D001753 8.2e-20 100.9 128 53.1
Nitab4.5_0001568g0160 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.1e-19 100.5 121 59.5
Aa31sc37G30 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.4e-19 100.1 144 50.7
A06p38950 Brassica napus HOM05D001779 ORTHO05D001753 1.4e-19 100.1 128 53.9
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 1.4e-19 100.1 128 53.9
Duzib138G0054 Durio zibethinus HOM05D001779 ORTHO05D001753 1.4e-19 100.1 134 53.7
SalBow6G6670 Salvia bowleyana HOM05D001779 ORTHO05D001753 1.4e-19 100.1 136 52.2
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 1.8e-19 99.8 137 54.7
Manes.12G045500 Manihot esculenta HOM05D001779 ORTHO05D001753 1.8e-19 99.8 130 52.3
Thecc.01G224400 Theobroma cacao HOM05D001779 ORTHO05D001753 1.8e-19 99.8 142 48.6
Thhalv10004021m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 2.4e-19 99.4 141 48.9
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.4e-19 99.4 134 54.5
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 2.4e-19 99.4 134 54.5
Lsat_1_v5_gn_8_89800 Lactuca sativa HOM05D001779 ORTHO05D001753 2.4e-19 99.4 104 63.5
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 4.1e-19 98.6 69 79.7
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 4.1e-19 98.6 129 51.9
Peaxi162Scf00403g00211 Petunia axillaris HOM05D001779 ORTHO05D001753 5.3e-19 98.2 74 77.0
QL09p053959 Quercus lobata HOM05D001779 ORTHO05D001753 5.3e-19 98.2 134 54.5
RcHm_v2.0_Chr7g0231531 Rosa chinensis HOM05D001779 ORTHO05D001753 5.3e-19 98.2 136 55.1
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea HOM05D001779 ORTHO05D001753 6.9e-19 97.8 148 48.6
C07p39380 Brassica napus HOM05D001779 ORTHO05D001753 6.9e-19 97.8 127 52.8
BolC7t44458H Brassica oleracea HOM05D001779 ORTHO05D001753 6.9e-19 97.8 127 52.8
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 9.1e-19 97.4 137 53.3
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 1.2e-18 97.1 148 48.0
BcaC06g30763 Brassica carinata HOM05D001779 ORTHO05D001753 1.5e-18 96.7 141 49.6
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 1.5e-18 96.7 76 72.4
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 1.5e-18 96.7 63 84.1
Sed0015503 Sechium edule HOM05D001779 ORTHO05D001753 1.5e-18 96.7 137 51.8
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 2.0e-18 96.3 141 51.8
Lj6A358T55 Lonicera japonica HOM05D001779 ORTHO05D001753 2.0e-18 96.3 141 51.8
SGA_v2.0_scaffold171G38942 Striga asiatica HOM05D001779 ORTHO05D001753 2.0e-18 96.3 141 53.2
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.0e-18 96.3 120 54.2
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 2.6e-18 95.9 123 55.3
SalBow6G7015 Salvia bowleyana HOM05D001779 ORTHO05D001753 2.6e-18 95.9 136 50.7
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 2.6e-18 95.9 137 53.3
FAN18G1972 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.4e-18 95.5 136 52.2
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 4.5e-18 95.1 137 49.6
FvH4_5g33190 Fragaria vesca HOM05D001779 ORTHO05D001753 4.5e-18 95.1 136 52.2
TPR.G39697 Trifolium pratense HOM05D001779 ORTHO05D001753 4.5e-18 95.1 136 52.9
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 5.9e-18 94.7 144 50.0
BcaC06g30762 Brassica carinata HOM05D001779 ORTHO05D001753 5.9e-18 94.7 129 53.5
FAN04G2077 Fragaria x ananassa HOM05D001779 ORTHO05D001753 7.7e-18 94.4 136 52.2
Solyc01g006500.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 7.7e-18 94.4 140 52.9
Atru.chr5.2026 Acer truncatum HOM05D001779 ORTHO05D001753 1.7e-17 93.2 149 48.3
Potri.002G243600 Populus trichocarpa HOM05D001779 ORTHO05D001753 2.2e-17 92.8 141 51.1
Os06g0172000 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 2.9e-17 92.4 63 79.4
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 3.8e-17 92.0 72 75.0
FAN08G2977 Fragaria x ananassa HOM05D001779 ORTHO05D001753 6.5e-17 91.3 136 50.7
Zm00001eb281690 Zea mays HOM05D001779 ORTHO05D001753 8.5e-17 90.9 76 69.7
Carub.0008s0848 Capsella rubella HOM05D001779 ORTHO05D001753 1.1e-16 90.5 140 50.7
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 1.4e-16 90.1 110 57.3
GSVIVG01028689001 Vitis vinifera HOM05D001779 ORTHO05D001753 1.4e-16 90.1 136 50.7
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 2.5e-16 89.4 118 55.9
Glyma.08G352500 Glycine max HOM05D001779 ORTHO05D001753 2.5e-16 89.4 149 50.3
Psat3g145680 Pisum sativum HOM05D001779 ORTHO05D001753 4.2e-16 88.6 149 47.0
HPP92_023347 Vanilla planifolia HOM05D001779 ORTHO05D001753 3.9e-14 82.0 147 47.6
Lj1g0021736 Lotus japonicus HOM05D001779 ORTHO05D001753 5.2e-14 81.6 136 47.8
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 6.7e-14 81.3 100 56.0
VMungo1383G2648 Vigna mungo HOM05D001779 ORTHO05D001753 1.1e-13 80.5 60 78.3
Ca_07638_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 3.3e-13 79.0 145 43.4
Phvul.008G126700 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 9.7e-13 77.4 144 45.1
Rhsim13G0045700 Rhododendron simsii HOM05D001779 ORTHO05D001753 5.5e-08 61.6 70 54.3
SEGI_26661 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 1.0e-06 57.4 79 50.6
vmacro02764 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 6.7e-06 54.7 64 57.8


User provided reference genes

Program Settings