Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 9.0e-63 243.8 162 100.0
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.4e-54 215.3 161 73.3
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 9.7e-41 170.6 161 61.5
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 3.2e-36 155.6 161 55.9
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.2e-32 142.9 161 54.0
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.7e-24 116.7 149 49.7
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 2.8e-24 115.9 166 48.2
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 6.8e-18 94.7 155 41.3
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 5.7e-17 91.7 161 39.8
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 7.5e-17 91.3 161 39.1
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.3e-16 90.5 146 43.2
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.3e-16 90.5 161 39.1
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.3e-16 90.5 161 39.1
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.3e-16 90.5 146 39.7
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 4.8e-16 88.6 81 55.6
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 2.4e-15 86.3 87 54.0
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.4e-15 86.3 161 37.3
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 3.1e-15 85.9 84 53.6
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 5.4e-15 85.1 159 36.5
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.2e-14 84.0 84 52.4
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.6e-14 83.6 75 56.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.0e-14 83.2 161 37.9
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.0e-13 80.9 144 36.8
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.0e-13 80.9 78 56.4
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.0e-13 80.9 87 51.7
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.0e-13 80.9 157 38.9
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.3e-13 80.5 155 38.1
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.7e-13 80.1 162 35.8
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 2.9e-13 79.3 86 48.8
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 3.8e-13 79.0 86 47.7
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 5.0e-13 78.6 161 37.9
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 6.5e-13 78.2 163 34.4
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 6.5e-13 78.2 161 34.2
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 6.5e-13 78.2 84 48.8
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.1e-12 77.4 156 37.2
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.1e-12 77.4 162 34.6
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.5e-12 77.0 87 49.4
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.5e-12 77.0 153 35.3
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 1.5e-12 77.0 147 34.7
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 2.5e-12 76.3 144 38.2
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 3.2e-12 75.9 159 33.3
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 3.2e-12 75.9 154 37.0
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.2e-12 75.9 132 38.6
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 3.2e-12 75.9 159 30.8
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 4.2e-12 75.5 163 33.7
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 4.2e-12 75.5 154 35.7
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 4.2e-12 75.5 147 36.7
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 5.5e-12 75.1 151 35.8
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 7.2e-12 74.7 161 34.2
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 9.5e-12 74.3 153 33.3
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 9.5e-12 74.3 161 33.5
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.2e-11 73.9 86 47.7
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.2e-11 73.9 86 47.7
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.2e-11 73.9 147 32.7
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.6e-11 73.6 148 35.1
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.6e-11 73.6 76 52.6
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 2.1e-11 73.2 132 39.4
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.1e-11 73.2 165 34.5
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 2.7e-11 72.8 144 35.4
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.7e-11 72.8 156 30.1
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 2.7e-11 72.8 156 32.7
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 3.6e-11 72.4 156 35.3
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.6e-11 72.4 85 48.2
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 3.6e-11 72.4 157 35.7
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.6e-11 72.4 75 49.3
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 4.7e-11 72.0 85 45.9
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 6.1e-11 71.6 170 32.9
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 6.1e-11 71.6 78 48.7
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 8.0e-11 71.2 85 43.5
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.4e-10 70.5 86 41.9
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 1.4e-10 70.5 86 41.9
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.8e-10 70.1 75 46.7
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.8e-10 70.1 75 46.7
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.8e-10 70.1 147 31.3
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.3e-10 69.7 166 34.3
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.3e-10 69.7 131 39.7
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 2.3e-10 69.7 161 33.5
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 3.0e-10 69.3 144 34.0
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.0e-10 69.3 154 35.7
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 4.0e-10 68.9 74 48.6
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.2e-10 68.6 162 33.3
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 5.2e-10 68.6 61 55.7
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 8.8e-10 67.8 86 40.7
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 8.8e-10 67.8 76 50.0
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.2e-09 67.4 153 32.0
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.2e-09 67.4 72 47.2
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.2e-09 67.4 76 50.0
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.5e-09 67.0 185 31.4
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.0e-09 66.6 161 30.4
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.0e-09 66.6 140 36.4
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 3.4e-09 65.9 159 30.8
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 4.4e-09 65.5 86 40.7
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 9.8e-09 64.3 157 29.9
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.2e-08 63.2 86 40.7
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.2e-08 63.2 84 44.0
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.2e-08 63.2 63 52.4
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 3.7e-08 62.4 86 38.4
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 6.3e-08 61.6 76 44.7
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.1e-07 60.8 154 32.5
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 1.4e-07 60.5 152 33.6
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.8e-07 60.1 51 52.9
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 2.4e-07 59.7 81 44.4
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 2.4e-07 59.7 81 44.4
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 3.1e-07 59.3 83 43.4
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 4.1e-07 58.9 81 45.7
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 4.1e-07 58.9 81 45.7
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 4.1e-07 58.9 63 47.6
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 5.4e-07 58.5 137 31.4
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 9.2e-07 57.8 94 40.4
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 9.2e-07 57.8 94 40.4
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 9.2e-07 57.8 94 39.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.2e-06 57.4 154 33.1
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.6e-06 57.0 73 41.1
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.0e-06 56.6 160 30.0
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 4.5e-06 55.5 62 48.4
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 4.5e-06 55.5 79 43.0
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 5.9e-06 55.1 68 42.6


User provided reference genes

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