Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.3e-260 902.5 465 100.0
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.1e-222 776.5 465 88.4
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.4e-222 776.2 465 85.6
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 9.7e-219 763.5 465 83.2
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.3e-218 763.1 466 84.3
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.2e-213 746.5 466 85.8
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.2e-206 721.8 468 79.7
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 5.5e-198 694.5 463 76.5
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 2.7e-197 692.2 471 75.8
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 8.0e-197 690.6 462 76.8
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.0e-196 688.3 460 75.7
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 6.8e-196 687.6 460 75.4
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.2e-195 686.8 477 75.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 5.7e-195 684.5 460 75.0
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.1e-193 680.2 465 76.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 5.9e-192 674.5 461 75.7
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 6.6e-191 671.0 463 75.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.5e-190 669.1 456 75.2
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 3.3e-190 668.7 443 75.8
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 5.5e-190 667.9 382 84.6
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.8e-189 665.6 465 74.8
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 4.7e-189 664.8 464 75.0
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 6.1e-189 664.5 461 75.1
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 8.0e-189 664.1 465 72.0
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 8.0e-189 664.1 464 72.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-188 663.7 465 74.6
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 4.0e-188 661.8 461 74.0
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 6.8e-188 661.0 476 70.8
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.5e-187 659.8 468 73.3
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.0e-187 659.4 469 73.1
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 3.4e-187 658.7 409 80.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.4e-187 658.7 459 75.2
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.7e-186 656.4 476 71.0
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.2e-186 656.0 462 74.2
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 2.9e-186 655.6 467 73.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 2.9e-186 655.6 409 79.5
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.9e-186 655.6 390 83.1
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 4.9e-186 654.8 465 74.2
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 6.3e-186 654.4 462 72.5
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 8.3e-186 654.1 463 71.9
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.1e-185 653.7 461 72.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.8e-185 652.9 468 71.8
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 4.1e-185 651.7 461 73.5
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 4.1e-185 651.7 394 80.5
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 7.0e-185 651.0 474 71.5
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 7.0e-185 651.0 528 65.7
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 9.2e-185 650.6 453 73.7
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 9.2e-185 650.6 465 74.0
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 2.7e-184 649.0 460 74.3
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 2.7e-184 649.0 464 71.6
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 3.5e-184 648.7 469 71.9
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 7.8e-184 647.5 382 82.2
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.0e-183 647.1 392 80.1
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 2.3e-183 646.0 453 73.3
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.9e-183 645.2 453 72.8
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 5.0e-183 644.8 375 82.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 6.6e-183 644.4 472 70.6
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.5e-182 643.3 471 70.3
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.5e-182 643.3 462 72.5
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 2.5e-182 642.5 417 75.1
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 3.3e-182 642.1 463 70.2
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.3e-182 642.1 464 70.0
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 5.6e-182 641.3 472 71.2
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-181 640.2 454 72.5
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.8e-181 639.0 444 73.9
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-181 638.6 464 69.8
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 3.6e-181 638.6 463 69.5
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 3.6e-181 638.6 460 70.0
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 3.6e-181 638.6 443 74.5
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.7e-181 638.3 456 71.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 8.0e-181 637.5 414 77.5
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.8e-180 636.3 464 69.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.8e-180 636.3 380 80.8
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.8e-180 636.3 386 79.8
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.8e-180 636.3 469 72.1
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.8e-180 636.3 460 72.2
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.3e-180 636.0 464 69.6
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.3e-180 636.0 405 78.3
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 3.1e-180 635.6 401 77.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 5.2e-180 634.8 400 76.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.9e-180 634.0 463 69.3
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.0e-179 632.9 456 70.6
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.0e-179 632.9 464 69.4
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.4e-179 632.1 375 81.3
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 4.4e-179 631.7 372 80.6
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 4.4e-179 631.7 388 79.9
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 5.8e-179 631.3 414 76.6
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.5e-179 630.9 466 69.3
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 7.5e-179 630.9 464 69.2
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 7.5e-179 630.9 430 72.8
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 7.5e-179 630.9 380 81.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 9.8e-179 630.6 466 69.5
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 9.8e-179 630.6 464 68.5
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.7e-178 629.8 464 69.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 2.2e-178 629.4 446 70.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.9e-178 629.0 386 77.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.4e-177 626.7 466 68.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.9e-177 626.3 427 73.8
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.4e-177 625.9 458 71.2
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 9.2e-177 624.0 381 79.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.6e-176 623.2 371 79.8
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.0e-175 619.0 429 73.0
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.1e-174 617.1 464 69.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.3e-170 603.6 431 70.3
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.7e-170 603.2 371 77.6
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 9.2e-169 597.4 406 73.9
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 4.6e-168 595.1 445 67.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.3e-158 561.2 357 73.9
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.3e-149 533.9 419 64.9
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.0e-143 514.2 387 66.4
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.6e-142 508.4 371 72.2
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.6e-141 506.9 371 66.8
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 3.6e-141 505.8 462 59.5
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.3e-138 497.3 373 64.9
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.9e-137 493.4 344 72.7
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 2.1e-136 490.0 464 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 4.3e-134 482.3 362 64.9
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 8.1e-133 478.0 360 65.3
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.6e-128 463.8 366 63.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.7e-127 458.4 275 78.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 5.9e-123 445.3 289 72.7
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 3.8e-122 442.6 276 76.4
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.3e-119 434.1 264 79.9
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.0e-111 407.9 465 52.7
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.4e-111 407.5 378 59.3
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.8e-109 399.8 252 76.2
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 4.5e-107 392.5 289 69.6
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 6.1e-104 382.1 341 62.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 2.6e-102 376.7 325 63.4
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 6.7e-95 352.1 334 60.5
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 2.0e-94 350.5 358 51.4
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 7.5e-94 348.6 210 81.9
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.7e-93 347.4 331 52.3
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.3e-87 327.0 234 70.1
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 3.4e-86 323.2 201 75.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.2e-83 314.7 226 69.9
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 5.9e-75 285.8 211 67.3
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.0e-72 275.4 178 75.8
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.6e-62 243.8 212 60.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 5.4e-60 236.1 124 86.3
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 5.4e-60 236.1 212 59.4
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.6e-59 234.6 408 37.7
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 5.0e-58 229.6 291 44.7
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 9.5e-57 225.3 135 82.2
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 4.4e-46 189.9 134 70.1
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 6.2e-40 169.5 115 75.7
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 2.1e-35 154.5 85 83.5
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 8.7e-34 149.1 109 72.5
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 4.3e-33 146.7 123 62.6
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-32 145.2 156 57.1
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.2e-27 128.6 77 83.1
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.0e-22 111.3 123 55.3
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.4e-20 105.1 72 73.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 9.3e-20 102.4 71 73.2
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.9e-17 94.7 59 84.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 9.6e-17 92.4 59 84.7
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 9.0e-15 85.9 68 60.3
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.5e-14 85.1 50 78.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 6.5e-13 79.7 58 56.9
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.9e-09 68.2 44 72.7
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 6.9e-07 59.7 220 25.0


User provided reference genes

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