Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.4e-188 660.2 336 100.0
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-179 632.9 336 94.9
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.4e-164 580.9 329 83.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.9e-163 579.3 333 84.7
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.3e-153 546.6 336 78.6
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 8.7e-153 543.9 336 78.9
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.0e-145 518.8 337 74.5
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.8e-143 512.3 337 72.4
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 8.2e-143 510.8 335 71.6
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 8.2e-143 510.8 335 72.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.4e-142 509.2 335 74.9
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.4e-142 509.2 336 71.1
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.1e-142 508.4 336 71.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 5.3e-142 508.1 336 73.2
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 5.3e-142 508.1 336 71.1
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.9e-142 507.7 336 72.0
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 9.1e-142 507.3 332 73.8
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.0e-141 506.1 333 72.1
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.0e-141 506.1 336 71.1
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.9e-141 504.6 336 71.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.2e-140 502.7 335 72.5
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.2e-140 502.7 335 72.5
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 6.5e-140 501.1 337 71.2
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.1e-139 500.4 331 71.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.4e-139 500.0 337 72.4
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 1.4e-139 500.0 336 72.6
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 2.5e-139 499.2 337 71.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 7.2e-139 497.7 337 72.4
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.2e-138 496.9 337 70.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.2e-138 496.9 338 69.5
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.6e-138 495.4 337 70.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 3.6e-138 495.4 335 70.1
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.1e-138 494.6 336 69.6
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 1.8e-137 493.0 337 69.4
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.8e-137 493.0 337 69.1
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.3e-137 492.7 337 69.4
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.0e-137 492.3 337 70.6
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.0e-137 492.3 329 71.7
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.9e-137 491.9 337 70.6
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.1e-137 491.5 337 71.2
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.1e-136 490.3 336 68.2
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.1e-136 490.3 337 69.7
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.5e-136 490.0 336 71.4
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.5e-136 490.0 336 70.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.4e-136 487.6 337 70.6
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.3e-135 486.9 337 70.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 3.7e-135 485.3 335 69.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 8.2e-135 484.2 333 70.3
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.1e-134 483.8 337 68.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 3.1e-134 482.3 339 67.6
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.5e-133 479.9 337 67.7
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 2.0e-133 479.6 328 71.0
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.6e-133 479.2 338 69.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.6e-133 479.2 338 69.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.6e-133 479.2 336 67.6
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.6e-133 479.2 337 68.8
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 7.7e-133 477.6 336 69.0
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.0e-132 477.2 334 68.9
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.0e-132 477.2 336 68.8
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.9e-132 475.7 334 68.3
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.9e-132 475.7 337 68.2
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 3.8e-132 475.3 336 68.5
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.9e-131 473.0 333 72.1
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.9e-131 473.0 332 66.3
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.9e-131 473.0 331 68.6
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 1.2e-130 470.3 341 70.4
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 1.6e-130 469.9 332 68.1
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.7e-130 469.2 346 65.9
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.7e-130 469.2 329 66.3
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 4.7e-130 468.4 338 66.9
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.4e-129 466.8 337 65.9
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-129 466.8 339 67.6
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.8e-129 466.5 331 68.0
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.9e-129 465.3 337 67.4
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 3.9e-129 465.3 337 67.1
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 3.9e-129 465.3 338 66.3
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-128 463.8 338 67.5
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.1e-128 463.8 335 66.9
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 2.6e-128 462.6 337 67.1
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 2.6e-128 462.6 329 65.7
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.3e-128 462.2 337 67.4
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 4.4e-128 461.8 338 67.2
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.2e-127 459.5 334 66.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 3.7e-127 458.8 330 65.5
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 4.1e-126 455.3 344 66.6
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 2.6e-125 452.6 328 66.5
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.9e-125 451.4 337 66.8
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 7.7e-125 451.1 336 65.5
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 6.5e-124 448.0 336 66.1
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.1e-123 447.2 338 63.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.9e-123 446.4 312 67.6
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 6.1e-122 441.4 329 66.6
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.4e-121 440.3 333 67.0
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.4e-121 440.3 334 65.9
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.3e-121 439.5 334 65.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.2e-121 438.3 339 66.4
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 8.8e-121 437.6 329 62.6
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 5.7e-120 434.9 329 63.5
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.1e-118 430.6 338 62.1
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.1e-118 428.7 336 63.7
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 3.8e-116 422.2 337 61.7
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 3.8e-116 422.2 334 61.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.1e-115 420.6 337 61.1
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 3.6e-114 415.6 336 59.8
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 6.1e-114 414.8 328 64.0
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 4.0e-113 412.1 327 59.0
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 5.2e-113 411.8 327 58.7
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 8.8e-113 411.0 335 59.4
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 9.8e-112 407.5 328 61.6
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-110 404.1 328 61.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.4e-110 402.9 331 62.2
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 9.1e-110 401.0 377 55.7
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 2.7e-109 399.4 321 61.1
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.9e-107 393.3 249 76.7
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 7.2e-107 391.3 289 65.7
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.1e-106 389.8 314 60.2
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 2.1e-106 389.8 320 63.8
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 6.1e-106 388.3 287 65.2
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 6.4e-95 351.7 258 69.0
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 9.2e-86 321.2 344 48.3
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 9.5e-83 311.2 349 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.8e-82 309.7 385 45.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 2.3e-81 306.6 217 70.0
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 2.3e-81 306.6 339 50.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.0e-81 305.8 276 55.1
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 5.2e-81 305.4 334 49.7
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 2.9e-79 299.7 209 68.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 3.5e-77 292.7 314 50.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 8.6e-76 288.1 408 41.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.0e-73 279.3 192 70.3
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 4.4e-72 275.8 274 52.2
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 1.9e-67 260.4 250 52.8
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 3.2e-62 243.0 183 60.7
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.7e-55 220.7 184 55.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.5e-48 197.6 155 61.3
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 6.5e-47 192.2 376 33.5
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 2.5e-43 180.3 248 42.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.6e-42 177.6 336 37.2
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.0e-40 170.6 120 67.5
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.7e-39 167.5 143 55.2
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 5.0e-39 166.0 155 53.5
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-35 154.5 137 55.5
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.5e-35 154.5 137 55.5
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 2.0e-27 127.5 76 77.6
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.8e-26 123.6 152 44.7
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 8.2e-26 122.1 109 59.6
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 2.0e-24 117.5 90 57.8
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 3.0e-20 103.6 271 29.9
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.9e-15 87.0 67 59.7
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 8.5e-15 85.5 76 50.0
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 6.1e-13 79.3 67 56.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.0e-12 78.6 38 86.8
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.8e-09 67.8 47 74.5
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 1.2e-08 65.1 59 55.9
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 1.7e-07 61.2 34 82.4
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 5.5e-06 56.2 69 40.6


User provided reference genes

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