Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 0.0e+00 1268.8 636 100.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 0.0e+00 1099.7 733 79.3
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.3e-279 966.1 730 69.2
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.5e-238 829.7 726 62.8
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 3.4e-214 748.8 728 55.8
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.3e-209 732.3 732 53.3
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 4.0e-207 725.3 708 56.5
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 4.4e-206 721.8 738 52.7
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 1.7e-205 719.9 733 53.1
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.1e-204 715.3 736 52.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 5.4e-204 714.9 736 52.7
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.5e-201 706.1 736 52.4
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 5.6e-201 704.9 728 53.0
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 9.6e-201 704.1 727 51.4
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.8e-199 699.9 732 51.4
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.1e-199 699.1 728 51.5
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.5e-198 696.8 730 50.8
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.8e-198 694.9 729 51.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.7e-197 693.3 730 51.2
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.4e-196 688.3 732 50.8
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.2e-195 687.2 725 50.6
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 1.6e-195 686.8 730 51.0
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.0e-194 684.1 731 50.6
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 5.1e-194 681.8 729 51.2
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 6.6e-194 681.4 730 49.6
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 6.6e-194 681.4 728 50.0
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.8e-192 676.0 729 49.1
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 2.8e-192 676.0 725 50.2
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 8.1e-192 674.5 714 52.2
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 8.1e-192 674.5 730 50.0
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.8e-191 673.3 730 50.3
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.8e-191 673.3 732 49.9
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 4.0e-191 672.2 726 49.2
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 6.9e-191 671.4 729 49.2
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.5e-190 670.2 747 49.8
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 3.4e-190 669.1 728 49.5
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 9.9e-190 667.5 728 49.0
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.3e-189 667.2 768 48.6
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.9e-189 665.2 728 51.1
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.1e-188 664.1 725 49.2
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.4e-188 663.7 728 50.0
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.4e-188 662.9 731 49.0
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.2e-188 662.1 731 49.0
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.1e-188 661.4 728 48.9
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 9.3e-188 661.0 728 49.0
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.6e-187 660.2 728 48.9
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.0e-186 657.5 732 50.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.3e-186 657.1 738 49.2
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.7e-186 656.8 730 48.8
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 2.3e-186 656.4 725 49.0
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.6e-186 654.8 725 49.1
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 8.7e-186 654.4 728 49.0
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 8.7e-186 654.4 764 47.5
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.5e-185 653.7 731 49.5
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 5.6e-185 651.7 732 48.6
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 7.4e-185 651.4 726 48.9
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 9.6e-185 651.0 732 48.2
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.3e-184 650.6 725 48.4
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 1.3e-184 650.6 732 48.5
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 6.2e-184 648.3 726 48.6
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 4.0e-183 645.6 728 48.8
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 6.9e-183 644.8 725 48.6
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.2e-182 644.0 791 46.3
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.6e-182 642.9 730 47.7
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 4.5e-182 642.1 729 48.7
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 7.6e-182 641.3 725 48.7
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.7e-181 640.2 725 48.6
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 8.4e-181 637.9 730 47.9
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 3.2e-180 636.0 731 48.8
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 7.1e-180 634.8 731 47.7
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.5e-177 627.1 697 49.9
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 8.1e-176 621.3 707 47.1
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.5e-172 609.8 706 46.7
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 7.1e-172 608.2 689 49.2
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 3.5e-171 605.9 670 48.5
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 1.3e-165 587.4 729 45.7
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.3e-161 572.8 726 44.4
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 5.9e-158 562.0 648 48.5
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 3.8e-157 559.3 655 47.0
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.5e-153 547.4 700 44.9
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 3.4e-150 536.2 821 41.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 8.5e-149 531.6 607 47.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.2e-147 527.7 617 46.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 7.4e-145 518.5 707 41.6
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 9.7e-145 518.1 645 45.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.4e-143 513.5 729 41.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.5e-142 509.2 590 48.8
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.2e-141 506.9 607 45.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 2.2e-136 490.3 623 44.9
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.8e-133 479.6 494 50.2
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.1e-127 461.5 493 50.3
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.4e-127 461.1 719 40.6
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.8e-119 434.1 635 40.2
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 9.5e-116 421.8 493 47.7
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 4.7e-115 419.5 622 38.9
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.9e-112 409.5 457 47.3
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 7.5e-105 385.6 428 48.6
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 7.5e-105 385.6 668 37.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 3.2e-103 380.2 382 51.8
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 5.0e-101 372.9 736 34.0
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 5.8e-97 359.4 342 54.7
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.1e-92 345.1 595 37.1
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 4.9e-88 329.7 456 43.0
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.1e-82 312.0 580 34.8
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.4e-82 310.8 417 45.8
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 7.1e-71 272.7 293 48.1
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.0e-69 268.9 833 29.4
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.3e-68 263.8 528 33.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 4.5e-57 226.9 235 51.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.7e-52 209.9 470 30.6
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.1e-42 179.1 174 54.6
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.5e-40 169.9 458 29.0
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.2e-39 167.2 154 53.9
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.1e-34 150.6 93 62.4
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.5e-32 143.3 224 37.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.2e-31 139.8 99 64.6
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 3.0e-29 134.4 103 61.2
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-28 130.2 199 41.7
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.1e-26 124.4 86 57.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.0e-24 117.1 125 50.4
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 3.6e-22 110.9 597 24.8
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 8.0e-22 109.8 170 34.7
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.2e-20 105.9 170 32.9
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 7.5e-20 103.2 89 60.7
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 2.8e-19 101.3 68 61.8
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.0e-16 92.8 60 61.7
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 5.5e-15 87.0 112 45.5
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 8.0e-14 83.2 234 29.9
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.8e-13 79.7 76 53.9
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.8e-13 79.7 76 53.9
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.8e-13 79.7 76 53.9
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 5.7e-12 77.0 155 32.9
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 3.7e-11 74.3 44 72.7
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.1e-10 72.8 44 68.2
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.8e-10 72.0 92 48.9
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.3e-08 65.9 43 60.5
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.9e-08 64.7 39 66.7
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.9e-07 62.0 60 51.7
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 3.6e-06 57.8 100 38.0


User provided reference genes

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