Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.3e-31 140.2 146 100.0
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 9.4e-27 124.0 152 92.1
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 5.0e-20 101.7 152 82.9
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 1.2e-18 97.1 71 74.6
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 1.0e-17 94.0 69 73.9
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 7.4e-16 87.8 72 66.7
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 9.7e-16 87.4 146 81.5
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 2.8e-15 85.9 146 78.8
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 2.8e-15 85.9 146 78.8
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 8.2e-15 84.3 146 77.4
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.4e-14 82.8 66 68.2
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 5.3e-14 81.6 138 77.5
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 7.0e-14 81.3 67 70.1
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 1.2e-13 80.5 62 64.5
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 1.2e-13 80.5 146 78.1
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.0e-13 79.7 145 79.3
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 2.6e-13 79.3 146 77.4
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 3.5e-13 79.0 65 64.6
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 4.5e-13 78.6 63 69.8
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 5.9e-13 78.2 65 64.6
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 5.9e-13 78.2 65 64.6
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 5.9e-13 78.2 65 64.6
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 5.9e-13 78.2 65 64.6
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 7.7e-13 77.8 148 73.0
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 7.7e-13 77.8 146 71.2
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 7.7e-13 77.8 64 64.1
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.3e-12 77.0 52 75.0
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 1.7e-12 76.6 65 63.1
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.2e-12 76.3 66 65.2
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 2.2e-12 76.3 66 65.2
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 2.9e-12 75.9 146 70.5
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 2.9e-12 75.9 65 60.0
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 3.8e-12 75.5 65 61.5
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 3.8e-12 75.5 146 78.1
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 5.0e-12 75.1 64 62.5
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 5.0e-12 75.1 72 59.7
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 5.0e-12 75.1 141 77.3
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 8.5e-12 74.3 73 56.2
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 1.1e-11 73.9 150 68.0
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 1.9e-11 73.2 69 59.4
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.5e-11 72.8 150 67.3
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.5e-11 72.8 58 67.2
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 2.5e-11 72.8 51 68.6
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.2e-11 72.4 150 67.3
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 3.2e-11 72.4 66 60.6
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.2e-11 72.4 48 70.8
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 4.2e-11 72.0 67 65.7
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 4.2e-11 72.0 65 56.9
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 5.5e-11 71.6 60 61.7
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.5e-11 71.6 150 66.7
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 5.5e-11 71.6 50 70.0
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 7.2e-11 71.2 48 72.9
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 7.2e-11 71.2 71 56.3
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 9.4e-11 70.9 50 70.0
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 1.2e-10 70.5 140 74.3
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.2e-10 70.5 63 58.7
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 2.1e-10 69.7 67 58.2
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 2.1e-10 69.7 67 58.2
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 2.7e-10 69.3 61 59.0
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.7e-10 69.3 47 72.3
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 3.6e-10 68.9 57 63.2
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 3.6e-10 68.9 63 57.1
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 8.0e-10 67.8 71 50.7
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.0e-09 67.4 57 61.4
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 1.8e-09 66.6 57 64.9
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 1.8e-09 66.6 44 70.5
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 1.8e-09 66.6 65 53.8
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 1.8e-09 66.6 51 58.8
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.3e-09 66.2 65 56.9
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 3.0e-09 65.9 64 59.4
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 3.0e-09 65.9 51 64.7
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 4.0e-09 65.5 56 62.5
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 4.0e-09 65.5 50 64.0
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 5.2e-09 65.1 64 56.2
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 6.7e-09 64.7 57 63.2
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 8.8e-09 64.3 53 62.3
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 8.8e-09 64.3 59 59.3
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.2e-08 63.9 54 63.0
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.2e-08 63.9 51 64.7
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 1.2e-08 63.9 41 73.2
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 2.0e-08 63.2 81 46.9
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 2.0e-08 63.2 55 60.0
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 3.3e-08 62.4 73 50.7
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 3.3e-08 62.4 49 61.2
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 4.4e-08 62.0 49 63.3
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 5.7e-08 61.6 56 60.7
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 9.7e-08 60.8 47 63.8
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 9.7e-08 60.8 61 52.5
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 8.2e-07 57.8 71 49.3
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 1.1e-06 57.4 55 58.2
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 5.3e-06 55.1 54 51.9
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 5.3e-06 55.1 53 58.5
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 7.0e-06 54.7 49 61.2
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 9.1e-06 54.3 56 57.1


User provided reference genes

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