Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.4e-266 922.5 515 100.0
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 5.1e-253 877.5 514 93.4
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.6e-185 653.3 514 74.5
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 2.7e-177 625.9 513 69.0
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 2.4e-125 453.4 516 54.5
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.8e-117 427.2 529 51.8
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.6e-111 406.8 521 50.1
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.4e-109 401.0 530 50.2
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.5e-106 390.2 521 52.4
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.4e-101 373.6 526 49.4
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 5.3e-101 372.5 524 49.0
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.7e-99 367.5 535 48.2
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 5.0e-99 365.9 535 48.2
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 8.5e-99 365.2 535 48.2
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.0e-95 354.0 509 49.3
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.0e-95 354.0 509 49.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 4.5e-92 342.8 521 44.5
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 4.5e-92 342.8 543 45.1
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.2e-91 340.5 529 50.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 6.5e-91 339.0 390 54.9
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 4.2e-90 336.3 531 48.4
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.1e-89 334.0 515 49.1
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.7e-89 333.6 520 46.3
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 3.6e-89 333.2 591 45.0
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.0e-88 331.6 522 44.1
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.4e-88 331.3 534 45.1
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 4.0e-88 329.7 520 44.4
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.6e-87 327.0 446 47.3
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 7.5e-87 325.5 587 45.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.3e-86 324.7 526 44.9
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.7e-86 324.3 470 49.6
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 8.3e-86 322.0 592 45.4
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.8e-85 320.9 604 43.0
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.0e-84 317.4 528 43.2
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.7e-83 314.3 523 42.3
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.3e-83 313.9 531 43.7
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 5.0e-83 312.8 526 45.8
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.9e-82 310.8 528 41.9
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 3.3e-82 310.1 527 42.5
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.6e-81 307.8 539 45.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.0e-80 305.1 554 42.1
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 4.0e-80 303.1 414 48.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.2e-80 302.8 552 41.7
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.4e-79 300.1 508 43.3
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 9.8e-79 298.5 520 43.5
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.2e-78 297.4 543 41.1
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.8e-78 297.0 514 42.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 4.9e-78 296.2 525 42.3
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.4e-77 294.7 528 42.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 5.4e-77 292.7 519 43.0
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 7.0e-77 292.4 516 43.8
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 7.8e-76 288.9 381 50.7
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.9e-75 286.6 541 43.6
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.9e-75 286.6 531 43.9
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.5e-74 283.9 531 42.6
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 9.5e-74 282.0 525 41.3
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.1e-73 279.3 549 40.4
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 6.1e-73 279.3 533 43.0
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 8.0e-73 278.9 519 41.6
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.4e-72 278.1 543 41.3
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.1e-72 276.9 532 40.6
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 3.1e-72 276.9 378 48.7
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.8e-72 275.8 518 40.2
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.5e-71 274.6 527 39.7
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.6e-71 273.9 520 39.4
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 3.4e-71 273.5 373 50.9
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 9.8e-71 271.9 566 39.4
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.3e-70 271.6 528 40.2
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.9e-70 270.4 479 44.5
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 4.9e-70 269.6 531 40.3
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 4.9e-70 269.6 538 40.1
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.4e-69 268.1 381 49.1
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.4e-69 268.1 462 43.3
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 7.0e-69 265.8 528 41.7
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-67 261.5 462 42.2
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.1e-66 258.5 424 44.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.3e-66 256.9 593 37.4
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.4e-64 251.5 470 41.1
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.4e-64 251.5 470 41.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 9.8e-63 245.4 572 36.5
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.9e-62 243.8 583 39.1
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.9e-62 243.0 535 39.3
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.6e-60 238.0 524 38.7
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 3.0e-59 233.8 567 37.0
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.1e-58 231.9 372 47.3
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.9e-58 231.1 549 37.2
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.9e-58 231.1 492 38.6
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 5.6e-58 229.6 589 40.1
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.2e-57 228.4 528 38.4
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.2e-57 228.4 558 35.3
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 3.6e-57 226.9 424 40.1
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 8.1e-57 225.7 524 39.3
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 8.1e-57 225.7 534 35.2
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.4e-56 224.9 608 37.7
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.4e-56 224.9 514 34.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.3e-56 224.2 313 48.6
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 3.1e-56 223.8 518 38.6
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 5.2e-56 223.0 521 37.2
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.9e-53 214.5 516 39.1
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.0e-51 208.8 379 41.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 4.3e-50 203.4 523 35.9
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 5.6e-50 203.0 529 34.8
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.4e-48 198.4 494 38.1
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.8e-48 196.1 475 34.5
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 8.9e-48 195.7 523 33.7
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.3e-46 191.8 308 46.4
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 1.7e-46 191.4 348 42.8
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 5.1e-43 179.9 517 35.8
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 6.6e-43 179.5 524 34.7
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 4.3e-42 176.8 516 32.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 9.6e-42 175.6 495 33.1
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.3e-41 175.3 467 33.2
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 3.1e-40 170.6 497 35.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.3e-40 169.9 381 34.9
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 7.6e-39 166.0 495 36.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 9.9e-39 165.6 497 35.2
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.3e-38 165.2 497 35.2
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 5.4e-37 159.8 564 34.2
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.7e-36 157.5 517 30.6
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 4.6e-36 156.8 516 30.6
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 4.6e-36 156.8 518 34.9
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 6.0e-36 156.4 517 30.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 6.6e-35 152.9 516 33.5
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.9e-34 151.4 308 46.4
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.5e-34 151.0 390 35.6
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 9.6e-34 149.1 344 34.6
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.8e-32 144.8 518 34.7
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.3e-30 138.7 281 40.6
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.2e-28 132.1 186 48.9
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 5.1e-27 126.7 267 43.4
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.6e-23 114.4 126 50.8
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 4.5e-23 113.6 290 34.5
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-21 109.0 258 34.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.2e-21 107.1 258 36.8
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.4e-16 92.0 146 45.9
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 6.5e-14 83.2 199 44.7
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.4e-14 82.8 61 67.2
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.0e-11 75.9 111 44.1
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 5.7e-10 70.1 223 30.9
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.6e-07 61.2 190 40.0
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 2.2e-06 58.2 139 31.7


User provided reference genes

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