Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 1.9e-96 355.9 194 100.0
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 1.4e-33 147.1 192 48.4
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 2.0e-32 143.3 195 45.6
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 7.5e-32 141.4 193 43.5
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 1.1e-30 137.5 190 45.3
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 2.4e-30 136.3 192 45.8
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 7.1e-30 134.8 194 44.8
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 4.6e-29 132.1 194 40.2
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 3.0e-28 129.4 192 43.8
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 8.6e-28 127.9 198 39.9
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 8.6e-28 127.9 198 39.9
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 1.9e-27 126.7 192 41.1
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 2.5e-27 126.3 190 38.4
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 7.3e-27 124.8 190 37.9
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 9.5e-27 124.4 193 41.5
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 1.6e-26 123.6 193 41.5
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 6.2e-26 121.7 196 40.3
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 2.3e-25 119.8 193 38.3
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 5.2e-25 118.6 200 37.0
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 6.8e-25 118.2 171 43.9
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.5e-24 117.1 196 38.3
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 2.6e-24 116.3 193 37.8
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 9.9e-24 114.4 192 38.0
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 1.3e-23 114.0 197 37.1
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 2.2e-23 113.2 190 36.3
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 2.9e-23 112.8 192 38.5
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 3.8e-23 112.5 190 37.4
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 4.9e-23 112.1 197 37.6
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 4.9e-23 112.1 190 37.4
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 8.4e-23 111.3 193 36.8
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 8.4e-23 111.3 193 36.8
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.1e-22 110.9 188 38.3
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 2.4e-22 109.8 186 40.3
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 2.4e-22 109.8 206 35.4
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 5.4e-22 108.6 196 38.8
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 5.4e-22 108.6 176 39.8
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 5.4e-22 108.6 202 37.1
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 7.1e-22 108.2 194 38.1
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.2e-21 107.5 190 34.7
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 1.6e-21 107.1 170 40.0
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 7.8e-21 104.8 190 36.8
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 1.3e-20 104.0 198 35.4
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.0e-20 102.8 199 35.7
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.1e-19 100.9 195 34.9
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 1.5e-19 100.5 182 36.3
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 1.5e-19 100.5 191 36.1
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.5e-19 100.5 192 33.3
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 3.3e-19 99.4 192 33.9
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 4.3e-19 99.0 191 35.1
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 7.3e-19 98.2 102 49.0
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 7.3e-19 98.2 193 34.2
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 9.6e-19 97.8 108 48.1
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 1.6e-18 97.1 192 33.3
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 2.8e-18 96.3 175 38.3
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 4.7e-18 95.5 175 37.1
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 6.2e-18 95.1 241 32.8
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 6.2e-18 95.1 188 34.0
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 8.1e-18 94.7 102 49.0
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 1.4e-17 94.0 193 34.2
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 1.4e-17 94.0 221 33.5
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 1.4e-17 94.0 173 33.5
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 2.4e-17 93.2 102 49.0
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 2.4e-17 93.2 113 45.1
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 3.1e-17 92.8 84 57.1
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 6.9e-17 91.7 188 32.4
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 8.9e-17 91.3 142 36.6
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 1.2e-16 90.9 191 31.4
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 1.5e-16 90.5 196 37.8
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 1.5e-16 90.5 151 40.4
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 2.0e-16 90.1 188 33.5
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 2.6e-16 89.7 191 33.5
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 9.9e-16 87.8 188 31.4
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 9.9e-16 87.8 190 30.5
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 1.3e-15 87.4 101 47.5
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 1.3e-15 87.4 191 33.0
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 1.7e-15 87.0 193 32.6
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 2.2e-15 86.7 196 34.2
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 2.2e-15 86.7 196 34.2
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 2.2e-15 86.7 183 33.3
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 2.9e-15 86.3 191 30.4
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 3.8e-15 85.9 100 46.0
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 3.8e-15 85.9 100 46.0
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 4.9e-15 85.5 136 42.6
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 7.1e-14 81.6 190 32.1
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 6.0e-13 78.6 53 69.8
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 2.3e-12 76.6 155 36.1
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 1.1e-11 74.3 177 30.5
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 1.9e-11 73.6 216 26.9
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 3.3e-11 72.8 188 30.3
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 4.3e-11 72.4 216 26.9
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 4.3e-11 72.4 78 46.2
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.8e-09 67.0 91 42.9
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 1.8e-09 67.0 60 61.7
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 6.9e-09 65.1 134 38.1
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 1.2e-08 64.3 166 33.1
Haze_13999 Corylus avellana HOM05D006511 ORTHO05D007567 2.0e-08 63.5 56 60.7
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 2.6e-08 63.2 73 42.5
vmacro11028 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 3.8e-07 59.3 55 50.9


User provided reference genes

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