Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.4e-153 545.4 269 100.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.5e-118 429.9 265 81.5
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-117 426.0 265 80.4
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-117 426.0 265 80.4
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.8e-117 425.6 265 81.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-116 423.3 265 81.1
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-116 423.3 265 81.1
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.0e-115 419.5 265 80.0
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.4e-115 418.7 266 80.8
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.4e-115 418.7 265 78.9
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.4e-115 418.7 265 78.9
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 7.6e-115 417.5 265 79.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 3.8e-114 415.2 265 79.2
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-113 412.1 259 79.2
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-113 412.1 259 79.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-113 412.1 259 79.2
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.7e-112 409.1 266 78.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.6e-110 401.4 266 76.7
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 7.3e-110 401.0 265 77.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 9.6e-110 400.6 265 76.6
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 9.6e-110 400.6 265 76.6
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.2e-109 400.2 265 76.6
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 2.8e-109 399.1 265 77.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-108 396.7 266 77.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-108 396.7 266 77.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-108 396.7 266 77.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-108 396.7 266 77.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.4e-108 396.0 265 75.5
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.2e-107 393.7 261 77.0
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.2e-106 389.4 265 75.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.8e-106 388.7 261 75.9
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 3.9e-103 378.6 250 76.4
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.5e-102 376.7 239 77.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.6e-101 373.2 251 75.3
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-101 373.2 266 73.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 3.6e-101 372.1 266 75.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 3.6e-101 372.1 266 75.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 3.6e-101 372.1 266 75.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 3.6e-101 372.1 266 75.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 3.6e-101 372.1 266 75.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 3.6e-101 372.1 266 75.2
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 6.9e-100 367.9 242 75.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.1e-94 350.5 236 75.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 7.4e-94 347.8 219 79.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 3.6e-93 345.5 233 73.8
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 3.6e-93 345.5 244 72.1
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 4.8e-93 345.1 245 73.5
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 3.4e-91 339.0 226 75.7
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-89 334.0 249 70.3
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-89 333.2 259 68.0
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.9e-87 325.5 201 78.1
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-86 322.4 200 78.0
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-86 322.4 200 78.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-86 322.4 200 78.0
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 4.8e-85 318.5 190 82.1
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 8.1e-85 317.8 193 79.3
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.9e-84 314.7 193 78.8
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-83 313.5 264 65.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 7.6e-83 311.2 234 69.2
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.1e-81 307.4 233 68.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.4e-81 307.0 190 78.9
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 5.7e-78 295.0 249 62.2
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.1e-76 290.8 265 60.8
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 7.6e-75 284.6 189 74.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.8e-74 282.3 266 60.5
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-74 281.6 240 65.0
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-74 281.6 240 65.0
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-73 280.4 173 77.5
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.9e-73 280.0 169 78.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-73 279.6 178 77.0
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.6e-72 276.9 172 77.9
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 8.2e-69 264.6 176 73.9
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 4.1e-68 262.3 161 78.3
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.8e-66 255.8 174 71.3
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 2.1e-64 250.0 174 69.5
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.1e-64 248.4 173 71.1
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-63 246.5 233 57.5
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-62 244.2 144 77.8
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 7.4e-62 241.5 161 74.5
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.3e-61 240.7 179 68.2
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.7e-61 240.4 152 78.3
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.8e-60 236.9 161 73.3
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 8.5e-58 228.0 169 66.3
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 8.5e-58 228.0 169 66.3
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.6e-56 222.6 265 49.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.4e-55 220.7 133 81.2
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 6.7e-55 218.4 158 69.6
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.2e-53 211.5 135 78.5
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 4.1e-52 209.1 132 78.8
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 5.9e-51 205.3 127 80.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.8e-42 176.0 259 44.4
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 8.5e-42 174.9 120 76.7
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.2e-41 172.6 158 58.9
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 5.5e-41 172.2 112 73.2
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 6.1e-40 168.7 199 47.2
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 6.1e-40 168.7 108 80.6
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.3e-39 166.8 112 75.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 3.0e-39 166.4 130 70.0
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 3.1e-36 156.4 110 74.5
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-32 143.7 100 75.0
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 4.1e-28 129.4 91 73.6
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 4.1e-28 129.4 109 66.1
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 4.1e-28 129.4 106 68.9
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 4.3e-25 119.4 77 71.4
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 2.8e-24 116.7 138 49.3
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.2e-23 112.5 92 57.6
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-21 107.8 212 38.7
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 2.3e-18 97.1 200 34.5
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 3.9e-18 96.3 71 73.2
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-17 94.7 66 71.2
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.3e-17 92.8 75 68.0
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 5.6e-17 92.4 62 79.0
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.2e-16 91.3 62 79.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.2e-16 91.3 62 79.0
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-16 91.3 62 79.0
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.2e-16 91.3 91 59.3
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.8e-16 90.1 62 77.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 3.6e-16 89.7 62 77.4
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.7e-16 89.4 61 78.7
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 4.0e-15 86.3 51 66.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.7e-13 79.7 64 59.4
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 8.3e-13 78.6 54 79.6
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.2e-12 76.6 53 77.4
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-12 76.3 76 61.8
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 7.0e-12 75.5 75 56.0
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.5e-11 73.2 40 80.0
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-09 67.8 44 65.9
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 7.3e-09 65.5 58 50.0
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-07 61.2 205 30.2
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.0e-07 59.7 50 68.0
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-06 58.2 37 70.3
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-06 56.6 46 63.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 7.5e-06 55.5 37 75.7


User provided reference genes

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