Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 3.7e-114 414.8 205 100.0
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 8.2e-29 131.3 100 68.0
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.1e-28 129.4 99 67.7
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.1e-28 129.4 99 67.7
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 4.1e-20 102.4 138 50.7
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.7e-18 97.1 64 73.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.7e-18 97.1 64 73.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.7e-18 97.1 64 73.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.7e-18 97.1 64 73.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.7e-18 97.1 64 73.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.7e-18 97.1 64 73.4
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.2e-17 92.4 51 84.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.2e-17 92.4 51 84.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.2e-17 92.4 51 84.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.1e-16 88.6 64 65.6
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.8e-15 87.0 65 66.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.0e-15 86.3 54 75.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.2e-15 85.5 51 78.4
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.0e-14 83.6 51 76.5
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.0e-14 83.6 51 76.5
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.6e-14 83.2 51 78.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.4e-14 82.8 53 73.6
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 9.8e-14 81.3 55 72.7
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.8e-13 79.7 51 76.5
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-13 79.7 51 76.5
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.7e-13 79.3 49 75.5
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.7e-13 79.3 51 74.5
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 4.9e-13 79.0 49 75.5
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 4.9e-13 79.0 49 75.5
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 4.9e-13 79.0 49 75.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 4.9e-13 79.0 51 72.5
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 6.3e-13 78.6 50 74.0
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.3e-13 78.6 50 74.0
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 6.3e-13 78.6 50 74.0
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 6.3e-13 78.6 50 74.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 6.3e-13 78.6 50 74.0
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 6.3e-13 78.6 50 74.0
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.3e-13 78.2 51 72.5
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.3e-13 78.2 51 72.5
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 8.3e-13 78.2 51 74.5
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 8.3e-13 78.2 49 73.5
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.1e-12 77.8 51 72.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-12 77.0 50 72.0
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-12 77.0 50 70.0
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-12 76.3 50 72.0
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-12 76.3 50 72.0
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.1e-12 75.9 41 82.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 4.1e-12 75.9 48 75.0
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 5.4e-12 75.5 54 66.7
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.4e-12 75.5 50 74.0
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.4e-12 75.5 50 74.0
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-11 74.3 50 70.0
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.5e-11 72.8 51 70.6
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 7.8e-11 71.6 47 72.3
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.3e-10 70.1 50 66.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 6.6e-10 68.6 51 66.7
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.0e-07 61.2 54 53.7
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 5.2e-07 58.9 51 62.7
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.7e-06 55.5 59 45.8


User provided reference genes

Program Settings